View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_54 (Length: 266)
Name: NF3605_high_54
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 49677021 - 49676855
Alignment:
| Q |
1 |
aagttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcagtttataaccagagtgaaaggaatgagaagaggcgtgacaacgtttgtattttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||| |
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| T |
49677021 |
aagttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcaatttataaccagagtgaaaggaatgagaagaggcgtggcggcgtttctattttt |
49676922 |
T |
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| Q |
101 |
tcatttgatggaaatttaaagtttctaacgggaggggagatttgtgtcatgtgacaaaatagagggg |
167 |
Q |
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| T |
49676921 |
tcatttgatggaaatttaaagtttttaacgggaggggagatttgtgtcatgtgacaaaatagagggg |
49676855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 49676854 - 49676804
Alignment:
| Q |
196 |
gtatttttcccatttcaaattttaattaaaaatcagttgcatccgccaaag |
246 |
Q |
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| T |
49676854 |
gtatttttcccatttcaaattttaattaaaaatcagttgtatccgccaaag |
49676804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 38303423 - 38303495
Alignment:
| Q |
11 |
aacaatgaaaagagaaactgaaaaagtgtgtatgcagtttataaccagagtg----aaaggaatgagaagagg |
79 |
Q |
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| T |
38303423 |
aacaatgagaaaagaaactgaaaaggtgagtatgcagtttataaccagagtacttaaaaggaatgagaagagg |
38303495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 16911349 - 16911187
Alignment:
| Q |
1 |
aagttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcagtttataaccagagtgaaaggaatgagaagaggcgtgacaacgtttgtattttt |
100 |
Q |
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| T |
16911349 |
aagttacaacaacaatgagaagagaagatgaaaatatgtatatgcactttataactagagtgaaaggaatgagaagaggcgtgtctacgtttccatttat |
16911250 |
T |
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| Q |
101 |
tcatttgatggaaatttaaagtttctaacgggaggggagatttgtgtcatgtgacaaaataga |
163 |
Q |
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| T |
16911249 |
tcatttgatggcaactttacgtttctaacaagagggaagatttgtgtcttgtgacaaaataga |
16911187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 34795088 - 34795253
Alignment:
| Q |
20 |
aagagaaactgaaaaagtgtgtatgcagtttataaccagagtgaaaggaatgagaagaggcgtgacaacgtttgtattttttcatttgatggaaatttaa |
119 |
Q |
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| T |
34795088 |
aagagaaactgaaaaggcgtgcatgcaatttataaccagagtgaagggaataagaagaggcgtg----tgtttctattcttt-aattgacgacaacttaa |
34795182 |
T |
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| Q |
120 |
agtttctaacgggaggggagatttgtgtcatgtgacaaaatagagg-ggtgaatgtgtcatttaaagaaac |
189 |
Q |
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| T |
34795183 |
cttttctaacaacatgggaggtttgtgtcatgtgacaaaatagaggagatggctgtgtcatttaaagaaac |
34795253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 17364536 - 17364648
Alignment:
| Q |
1 |
aagttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcagtttataaccagagtgaaaggaatgagaagaggcgtgacaacgtttgtattttt |
100 |
Q |
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||||||||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| || | ||||| | |||| |
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| T |
17364536 |
aagttacaacaacaatgggaagagaaattgaaaatgtttgtatgcagtttataaccagagtgaaaggaatgagaagaggcttgttagcgtttct-ctttt |
17364634 |
T |
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| Q |
101 |
tcatttgatggaaa |
114 |
Q |
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| T |
17364635 |
tcatttgatggaaa |
17364648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 30332839 - 30332914
Alignment:
| Q |
3 |
gttacaacaacaatgaaaagagaaactgaaaaagtgtgtatgcagtttataaccagagtgaaaggaatgagaagagg |
79 |
Q |
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|||||||||||| |||||||||||||| |||| || |||||| ||| ||||| |||| ||||| |||||||||||| |
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| T |
30332839 |
gttacaacaacattgaaaagagaaact-aaaaggtatgtatgtggttcataactagagggaaagtaatgagaagagg |
30332914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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