View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_60 (Length: 250)
Name: NF3605_high_60
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_60 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 41460245 - 41459999
Alignment:
| Q |
12 |
acagactatgacaaaaatgagccaatcattcatagcagttataca--------cgcctcgctaccttcccttcccagttacttttactagttacaaccac |
103 |
Q |
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| T |
41460245 |
acagactatgacaaaaatgagccaatcattcatagcagttatacaaaagtacacgcctcgctaccttcccttcccagttacttttactagttacaaccac |
41460146 |
T |
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| Q |
104 |
ttgatagaactcgtattacattcgttattatttgtcgctggacatcggcaatctcaggtagaaatgttaagagaagcttggttctaaataatattagcta |
203 |
Q |
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|||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41460145 |
ttgacagaactcgtattacactcgatattatttgtcgctggacatcggcaatctcaggtagaaatgttaagagaagcttggttctaaataatattagcta |
41460046 |
T |
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| Q |
204 |
cagaggtgcctgtattcatggacaagatcacgggcaaatcatgcatt |
250 |
Q |
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| T |
41460045 |
cagaggtgcctgtattcatggacaagatcacgggcaaatcatgcatt |
41459999 |
T |
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