View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_68 (Length: 243)
Name: NF3605_high_68
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_68 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28925486 - 28925722
Alignment:
| Q |
1 |
agtcattttggtcggatttgattctaacataacttcccaacactttgccatcggtttctggttgcttcaaaagctcctcaattaagctcctcttcaggta |
100 |
Q |
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| T |
28925486 |
agtcatttgggtcggatttgattctaacataacttcccaacactttgccatcggtttctggttgcttcaaaagctcctcaattaagctcctcttcaggta |
28925585 |
T |
|
| Q |
101 |
gacaagttttatgtttgaactaactatagctgcaaatccacttggcagctcttctgaacgtacattctgacaagattttatagttgaattcaattttccg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
28925586 |
gacaagttttatgtttgaactaactatagctgcaaatccacttggcagctctttcgaacgtacattctgacaagattttatagttgaattcaaatttctg |
28925685 |
T |
|
| Q |
201 |
tgctttcgaaatttgaatgcctcattgtcatcccttt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
28925686 |
tgctttcgaaatttgaatgcctcattgtcatcccttt |
28925722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28916248 - 28916487
Alignment:
| Q |
1 |
agtcattttggtcggatttgattctaacataacttcccaacactttgccatc---ggtttctggttgcttcaaaagctcctcaattaagctcctcttcag |
97 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28916248 |
agtcatttgggtcggatttggttctaacataacttcccaacactttgccagcaaaggtatctggttgcttcaaaagctcctcaattaagctcctcttcaa |
28916347 |
T |
|
| Q |
98 |
gtagacaagttttatgtttgaactaactatagctgcaaatccacttggcagctcttctgaacgtacattctgacaagattttatagttgaattcaatttt |
197 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28916348 |
gtagacaagttttatgtttgaactaattattcctgcaaatccacttggcagctctttggaacgtacattctgacaagattttatagttgaattcaaattt |
28916447 |
T |
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| Q |
198 |
ccgtgctttcgaaatttgaatgcctcattgtcatcccttt |
237 |
Q |
| |
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| T |
28916448 |
ctgtgctttcgaaatttgaatgcctcattatcatcccttt |
28916487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 28901833 - 28902055
Alignment:
| Q |
1 |
agtcattttggtcggatttgattctaacataacttcccaacactttgccatc---ggtttctggttgcttcaaaagctcctcaattaagctcctcttcag |
97 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28901833 |
agtcatttgggtcggatttggttctaacataacttcccaacactttgccatcaaaggtttctggttgcttcaaaagctcctcaattaagcttctcttcaa |
28901932 |
T |
|
| Q |
98 |
gtagacaagttttatgtttgaactaactatagctgcaaatccacttggcagctcttctgaacgtacattctgacaagattttatagttgaattcaatttt |
197 |
Q |
| |
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|||||||||||| ||||||||| ||| ||||||||||||| |||||||| ||||||| || ||| ||||||||||| |||| ||||||||||||| ||| |
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| T |
28901933 |
gtagacaagtttcatgtttgaattaattatagctgcaaatacacttggctgctcttcagagagtatattctgacaaggttttgtagttgaattcaaattt |
28902032 |
T |
|
| Q |
198 |
ccgtgctttcgaaatttgaatgc |
220 |
Q |
| |
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|| |||||| ||||||||||||| |
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| T |
28902033 |
ccctgctttggaaatttgaatgc |
28902055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 28891881 - 28892107
Alignment:
| Q |
3 |
tcattttggtcggatttgattctaacataacttcccaacactttgccatc---ggtttctggttgcttcaaaagctcctcaattaagctcctcttcaggt |
99 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||| |||| ||||||||| | ||| |||||||| ||||| ||| ||||| | | || |
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| T |
28891881 |
tcatttcggtcggatttgattctaacaaaacttcccaacactttgacatcaaaggtttctggcttctttaaaagctcatcaatcaaggtcctccttaagt |
28891980 |
T |
|
| Q |
100 |
agacaagttttatgtttgaactaactatagctgcaaatccacttggcagctcttctgaacgtacattctgacaagattttatagttgaattcaattttcc |
199 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||||| |||||| || ||| ||||||||||| |||| ||||||||||||| |||| |
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| T |
28891981 |
agacaagttttatgtttgaattaattatagctgcaaatccacttggctgctcttgagagagtagattctgacaaggttttgtagttgaattcaaatttct |
28892080 |
T |
|
| Q |
200 |
gtgctttcgaaatttgaatgcctcatt |
226 |
Q |
| |
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|||||| ||||||||||||||||||| |
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| T |
28892081 |
ctgctttggaaatttgaatgcctcatt |
28892107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 28935088 - 28935303
Alignment:
| Q |
10 |
ggtcggatttgattctaacataacttcccaacactttgccatc---ggtttctggttgcttcaaaagctcctcaattaagctcctcttcaggtagacaag |
106 |
Q |
| |
|
|||||| |||| |||||||| ||| ||||||||||||| |||| |||||||||||||||| ||||||||| |||||| | ||||| | ||||||||| |
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| T |
28935088 |
ggtcggttttggttctaacaaaacatcccaacactttgtcatcaaaggtttctggttgcttccgaagctcctcgattaaggttctctttaagtagacaag |
28935187 |
T |
|
| Q |
107 |
ttttatgtttgaactaactatagctgcaaatccacttggcagctcttctgaacgtacattctgacaagattttatagttgaattcaattttccgtgcttt |
206 |
Q |
| |
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|||| ||||||||||| |||||||||| | |||||||| || | ||| ||| | || |||||||||||||| ||| || || || |||| |||||| |
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| T |
28935188 |
ctttaggtttgaactaattatagctgcatagccacttggaagtttttcagaaactgcactctgacaagattttgtagccgagtttaaatttctctgcttt |
28935287 |
T |
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| Q |
207 |
cgaaatttgaatgcct |
222 |
Q |
| |
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||||||||||||||| |
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| T |
28935288 |
ggaaatttgaatgcct |
28935303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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