View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_72 (Length: 228)
Name: NF3605_high_72
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 1601247 - 1601442
Alignment:
| Q |
15 |
ctgagaagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttgcgatttttgnnnnnnnnttcaaatctggttc |
114 |
Q |
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| T |
1601247 |
ctgataagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttgcgatttttgaaaaaaaattcaaatctggttc |
1601346 |
T |
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| Q |
115 |
taggatgcaaatgatgtctttttgtaaactttaatctagatgttcgctaatcattatctatgctgtaagactggccagttatcttgttggcctggt |
210 |
Q |
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| T |
1601347 |
taggatgcaaatgatgtctttttgtaaactttaatctagatgttcactaatcattatctatgctgtaagactggccagttatcttgttggcctggt |
1601442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 8527810 - 8527640
Alignment:
| Q |
15 |
ctgagaagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttgcgatttttgnnnnnnnnttcaaatctggttc |
114 |
Q |
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| T |
8527810 |
ctgataagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttgtgattttgaaaaaaaactacaaatctcattt |
8527711 |
T |
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| Q |
115 |
taggatgcaaatgatgtc--tttttgtaaactttaatctagatgttcgctaatcattatctatgctgtaag |
183 |
Q |
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| T |
8527710 |
taagatgcaaatgatgtctttttttgtaaaatttaatctagatgttcattaatcattatctgtgctttaag |
8527640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 15618569 - 15618506
Alignment:
| Q |
20 |
aagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttg |
83 |
Q |
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| T |
15618569 |
aagaaagaatttacatacactagacagggttatgttaaatcacaagttatcatttggctagttg |
15618506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 8534301 - 8534236
Alignment:
| Q |
115 |
taggatgcaaatgatgtctttttgt--aaactttaatctagatgttcgctaatcattatctatgct |
178 |
Q |
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| T |
8534301 |
taggatgcaaatgatgtatttttttgaaaaatttaatctagatgttcattaatcattatctatgct |
8534236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 9075530 - 9075604
Alignment:
| Q |
104 |
aaatctggttctaggatgcaaatgatgtcttttt-gtaaactttaatctagatgttcgctaatcattatctatgc |
177 |
Q |
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| T |
9075530 |
aaatctcgttttaggatgcaaatgatggcttttttgttaactttaatctagaggttcatttatcattatctatgc |
9075604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 8643367 - 8643305
Alignment:
| Q |
115 |
taggatgcaaatgatgtct-ttttgtaaactttaatctagatgttcgctaatcattatctatg |
176 |
Q |
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| T |
8643367 |
taggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtaattatcatctatg |
8643305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 8545374 - 8545410
Alignment:
| Q |
115 |
taggatgcaaatgatgtc-tttttgtaaactttaatc |
150 |
Q |
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| T |
8545374 |
taggatgcaaatgatgtcttttttgtaaactttaatc |
8545410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 48362883 - 48363071
Alignment:
| Q |
14 |
actgagaagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttgcgatttttgnnnnnnnnttcaaatctggtt |
113 |
Q |
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| T |
48362883 |
actgataagagggaatttccatacactgggcagggttatgttaaatcacaagttatgatttggctagttgtgatttttg-aaaaaaatactattttcgtt |
48362981 |
T |
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| Q |
114 |
ctaggatgcaaatgatgtctttttgtaaactttaatctagatgttcgctaatcattatctatgctgtaagactggccagttatcttgttggc |
205 |
Q |
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| T |
48362982 |
ctaggatgcaaatgatgtctttt--taaactttaatctagatgttcgttaatcgttatctatgctacaagactggtatgttatcttgttggc |
48363071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 9441977 - 9441937
Alignment:
| Q |
15 |
ctgagaagaaggaatttccatacactaggcagggttatgtt |
55 |
Q |
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| T |
9441977 |
ctgataagaaggaatttccatacactaggcagggttatgtt |
9441937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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