View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3605_high_76 (Length: 213)
Name: NF3605_high_76
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_76 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 6331284 - 6331088
Alignment:
| Q |
14 |
cagagattgaacttccttccttaaattaaacgaactgaaaaatgctctgaagtgccagaaatcaaaatcagtcctgtgcggttgagattcatacattgtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6331284 |
cagagattgaacttccttccttaaattaaacgaactgaaaaatggtctgaagtgccagaaatcaaaatcagtcctgtgcggttgagattcatacattgtg |
6331185 |
T |
|
| Q |
114 |
ctg---------------ctaaaccagtcctttcgcaacagatgttgcaatctctcttgataaaatttgatgaagacgatgacatcgttgttatggg |
195 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6331184 |
ctgtgatttttagtccctctaaaccagtcctttcgaaacagatgttgcaatctctcttgataaaatttgatgaacacgatgacatcgttgttatggg |
6331088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University