View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3605_low_11 (Length: 520)

Name: NF3605_low_11
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3605_low_11
NF3605_low_11
[»] chr5 (20 HSPs)
chr5 (13-500)||(16802465-16802952)
chr5 (395-495)||(16439164-16439264)
chr5 (385-495)||(3180062-3180172)
chr5 (410-498)||(3899862-3899950)
chr5 (410-498)||(16971167-16971255)
chr5 (410-495)||(19655184-19655269)
chr5 (410-498)||(28818940-28819028)
chr5 (410-495)||(29699393-29699478)
chr5 (410-495)||(291123-291208)
chr5 (395-495)||(19598358-19598457)
chr5 (410-495)||(12913829-12913914)
chr5 (381-479)||(2935825-2935926)
chr5 (410-498)||(26662422-26662511)
chr5 (410-498)||(26934017-26934106)
chr5 (421-498)||(38134411-38134488)
chr5 (410-498)||(2093964-2094052)
chr5 (410-470)||(2953241-2953301)
chr5 (457-494)||(1638484-1638521)
chr5 (459-495)||(2953266-2953302)
chr5 (459-495)||(29699443-29699479)
[»] scaffold0047 (2 HSPs)
scaffold0047 (395-498)||(63780-63883)
scaffold0047 (459-498)||(63833-63872)
[»] chr1 (35 HSPs)
chr1 (385-498)||(8337854-8337966)
chr1 (380-495)||(4609022-4609137)
chr1 (382-491)||(9157340-9157449)
chr1 (410-495)||(29371394-29371479)
chr1 (385-500)||(741504-741619)
chr1 (400-495)||(37155072-37155167)
chr1 (400-498)||(34062232-34062330)
chr1 (379-463)||(1819485-1819569)
chr1 (409-494)||(17127590-17127675)
chr1 (410-495)||(29179624-29179709)
chr1 (385-498)||(46333948-46334061)
chr1 (410-495)||(48993944-48994029)
chr1 (395-495)||(47303421-47303521)
chr1 (421-495)||(1091582-1091656)
chr1 (421-495)||(32540786-32540860)
chr1 (381-498)||(5694888-5695004)
chr1 (410-491)||(5995399-5995480)
chr1 (410-498)||(33219596-33219684)
chr1 (396-494)||(48604960-48605058)
chr1 (385-494)||(48498442-48498550)
chr1 (410-498)||(49444940-49445026)
chr1 (432-495)||(36290456-36290519)
chr1 (412-495)||(45728313-45728396)
chr1 (432-498)||(15220834-15220900)
chr1 (433-495)||(44706834-44706896)
chr1 (446-495)||(21630068-21630117)
chr1 (403-498)||(38674525-38674618)
chr1 (450-495)||(28395663-28395708)
chr1 (385-466)||(28928781-28928862)
chr1 (459-498)||(34062285-34062324)
chr1 (457-495)||(46932023-46932061)
chr1 (465-498)||(48823908-48823941)
chr1 (459-495)||(8337877-8337913)
chr1 (466-498)||(37155129-37155161)
chr1 (459-495)||(47303471-47303507)
[»] chr4 (26 HSPs)
chr4 (382-494)||(55089995-55090107)
chr4 (380-495)||(40789205-40789320)
chr4 (380-498)||(47404582-47404700)
chr4 (410-495)||(51265471-51265556)
chr4 (410-498)||(42375033-42375121)
chr4 (400-498)||(52028572-52028670)
chr4 (410-495)||(23444296-23444381)
chr4 (410-495)||(47661868-47661953)
chr4 (410-494)||(47762635-47762719)
chr4 (410-495)||(6271728-6271813)
chr4 (385-498)||(31430463-31430573)
chr4 (395-470)||(45591422-45591497)
chr4 (410-498)||(53954633-53954721)
chr4 (432-495)||(30861823-30861886)
chr4 (410-495)||(31532716-31532801)
chr4 (410-495)||(35682192-35682277)
chr4 (385-470)||(50384107-50384192)
chr4 (410-493)||(26186043-26186124)
chr4 (382-468)||(28693922-28694008)
chr4 (385-470)||(24006072-24006157)
chr4 (382-443)||(55090074-55090135)
chr4 (385-441)||(55089879-55089935)
chr4 (411-470)||(25818401-25818460)
chr4 (459-498)||(50384128-50384167)
chr4 (459-498)||(52028625-52028664)
chr4 (459-495)||(6271778-6271814)
[»] chr2 (19 HSPs)
chr2 (395-495)||(15011306-15011406)
chr2 (402-498)||(2828607-2828703)
chr2 (410-498)||(6217251-6217339)
chr2 (395-498)||(2893986-2894089)
chr2 (421-498)||(38933610-38933687)
chr2 (410-498)||(14229380-14229467)
chr2 (431-498)||(29925618-29925685)
chr2 (401-495)||(37762019-37762113)
chr2 (410-491)||(14470619-14470700)
chr2 (410-495)||(16514450-16514535)
chr2 (410-498)||(37961729-37961817)
chr2 (421-495)||(6721977-6722051)
chr2 (433-495)||(29508741-29508803)
chr2 (409-491)||(24115950-24116032)
chr2 (382-443)||(14464554-14464615)
chr2 (395-495)||(9172993-9173093)
chr2 (410-485)||(14892297-14892371)
chr2 (465-498)||(2828666-2828699)
chr2 (472-500)||(1992266-1992294)
[»] chr8 (17 HSPs)
chr8 (385-495)||(8243390-8243500)
chr8 (410-495)||(35440996-35441081)
chr8 (410-495)||(5033187-5033272)
chr8 (409-493)||(4958627-4958710)
chr8 (410-494)||(10086784-10086868)
chr8 (410-498)||(39850978-39851066)
chr8 (409-498)||(6296628-6296717)
chr8 (410-495)||(45191154-45191239)
chr8 (410-494)||(8796449-8796533)
chr8 (385-483)||(34229679-34229777)
chr8 (410-495)||(33841618-33841703)
chr8 (410-495)||(5667123-5667208)
chr8 (385-470)||(34541805-34541890)
chr8 (451-493)||(2581853-2581895)
chr8 (421-470)||(31159902-31159951)
chr8 (459-495)||(10086833-10086869)
chr8 (410-458)||(35031641-35031689)
[»] chr3 (23 HSPs)
chr3 (382-498)||(47677254-47677370)
chr3 (385-495)||(43139711-43139821)
chr3 (410-495)||(51046100-51046185)
chr3 (410-498)||(1801473-1801561)
chr3 (377-495)||(55223258-55223376)
chr3 (410-495)||(50550001-50550086)
chr3 (382-494)||(30476473-30476585)
chr3 (385-489)||(33689208-33689312)
chr3 (400-495)||(29031731-29031826)
chr3 (410-495)||(41752990-41753075)
chr3 (400-495)||(18321677-18321772)
chr3 (410-489)||(47492074-47492153)
chr3 (411-495)||(30734430-30734514)
chr3 (446-498)||(39385751-39385803)
chr3 (420-493)||(50524730-50524803)
chr3 (454-498)||(1801566-1801610)
chr3 (410-494)||(30580783-30580867)
chr3 (382-439)||(47677337-47677394)
chr3 (385-498)||(49418693-49418806)
chr3 (459-498)||(33689252-33689291)
chr3 (461-498)||(49414501-49414538)
chr3 (459-495)||(30476500-30476536)
chr3 (459-495)||(47492073-47492109)
[»] chr7 (19 HSPs)
chr7 (385-495)||(27028795-27028905)
chr7 (395-498)||(29053326-29053429)
chr7 (410-495)||(11016895-11016980)
chr7 (410-495)||(15027568-15027653)
chr7 (433-497)||(7671961-7672025)
chr7 (380-498)||(4649343-4649463)
chr7 (410-491)||(38975835-38975916)
chr7 (395-495)||(34854707-34854807)
chr7 (436-495)||(22764753-22764812)
chr7 (400-495)||(41018245-41018340)
chr7 (410-489)||(48000769-48000848)
chr7 (421-498)||(42628318-42628395)
chr7 (446-495)||(45231913-45231962)
chr7 (410-495)||(4290571-4290656)
chr7 (433-493)||(30217504-30217564)
chr7 (446-499)||(10419480-10419533)
chr7 (454-495)||(27028754-27028795)
chr7 (459-495)||(11016945-11016981)
chr7 (410-458)||(48000721-48000769)
[»] chr6 (13 HSPs)
chr6 (400-495)||(551182-551277)
chr6 (381-494)||(10521847-10521960)
chr6 (410-498)||(24618628-24618716)
chr6 (410-498)||(12343123-12343211)
chr6 (446-498)||(31654328-31654380)
chr6 (431-495)||(17750928-17750992)
chr6 (431-494)||(24587488-24587551)
chr6 (385-443)||(31654307-31654365)
chr6 (432-489)||(13043489-13043546)
chr6 (382-443)||(24618679-24618740)
chr6 (404-460)||(2315325-2315381)
chr6 (395-443)||(10521927-10521975)
chr6 (459-495)||(12343176-12343212)
[»] scaffold0586 (1 HSPs)
scaffold0586 (421-495)||(7085-7159)
[»] scaffold0016 (1 HSPs)
scaffold0016 (411-495)||(49731-49815)
[»] scaffold1033 (1 HSPs)
scaffold1033 (384-469)||(2265-2350)
[»] scaffold1029 (1 HSPs)
scaffold1029 (384-469)||(2265-2350)
[»] scaffold0481 (1 HSPs)
scaffold0481 (395-471)||(2899-2975)
[»] scaffold0161 (1 HSPs)
scaffold0161 (421-495)||(27258-27332)
[»] scaffold0180 (1 HSPs)
scaffold0180 (415-468)||(19154-19207)


Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 13 - 500
Target Start/End: Complemental strand, 16802952 - 16802465
Alignment:
Q  13 aaaatattatctcctttaagcccacagattgtaccaaaagttaatttattcttaattttggtgatttatgaaataattaataataaattcattttcgttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16802952 aaaatattatctcctttaagcccacagattgtaccaaaagttaatttattcttaattttggtgatttatgaaataattaataataaattcattttcgttc 16802853  T
Q  113 catgatgatatatttacattttatttgtgtttgatcaagtttatttctatctgtttgaaaaataacatattcaaataatttttgtttaagatttttattg 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16802852 catgatgatatatttatattttatttgtgtttgatcaagtttatttctatctgtttgaaaaataacatattcaaataatttttgtttaagatttttattg 16802753  T
Q  213 ttaaaggagtattattttcctggttgtgatgtttaagattaatgtctaacgtataacctattgtgatacacgacaaagctagtataattatgtcatatag 312  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16802752 ttaaaggagtattcttttcctggttgtgatgtttaagattaatgtctaacgtataacctattgtgatacacgacaaagctagtataattatgtcatatag 16802653  T
Q  313 tgccttacttttgaataaatttaatctagaagtttatcatggtttaattacaaaggaaggtggtatgacggatagcacttaagtgatatagagttgagtg 412  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16802652 agccttacttttgaataaatttaatctagaagtttatcatggtttaattacaaaggaaggtggtatgacggatagcacttaagtgatatagagttgagtg 16802553  T
Q  413 acattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaat 500  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16802552 acattgaccaatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgattggccaatgtcacccaaat 16802465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 395 - 495
Target Start/End: Complemental strand, 16439264 - 16439164
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||| ||||||||| ||||||||||||||||| || |||||||||||||  |||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  16439264 gtgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcac 16439165  T
Q  495 c 495  Q
    |    
T  16439164 c 16439164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 495
Target Start/End: Original strand, 3180062 - 3180172
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    ||||||||  |||| ||||||||| |||||||||||||||||||| ||||||||| |||  |||||||||||||||||| ||||||  |||||||||||     
T  3180062 tagcacttgtgtgacatagagttgggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattga 3180161  T
Q  485 ccaatgtcacc 495  Q
    |||||||||||    
T  3180162 ccaatgtcacc 3180172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 3899950 - 3899862
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  3899950 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaa 3899862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 16971255 - 16971167
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  16971255 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaa 16971167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 19655269 - 19655184
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||  |||||| || |||||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  19655269 gtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 19655184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 28819028 - 28818940
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||| |||||||||| |||||||||||||  ||||||||||||| ||||  ||||| |||||||||||| ||||||||||||||    
T  28819028 gtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgattgaccaatgtcacccaa 28818940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 29699478 - 29699393
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||  |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  29699478 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 29699393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 291208 - 291123
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||||||||||| || ||||||||| |||  ||||||| ||||| |||| ||||||  |||||||||||||||||||||||    
T  291208 gtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgattggccaatgtcacc 291123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 495
Target Start/End: Complemental strand, 19598457 - 19598358
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||| ||||||||| |||||||| | ||||||||| |||| ||||||||  |||||||||||||||||| ||||||   |||||||||| ||||||||||    
T  19598457 gtgacatagagttgggtgacattaaccaatcataatgtca-aatgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtcac 19598359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 12913914 - 12913829
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||| |||| ||||||| || |||| ||||||||  ||||||||||| ||||||  ||||| ||||||||||||||||||||||||    
T  12913914 gtgatattggtcaatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatgtcacc 12913829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 479
Target Start/End: Original strand, 2935825 - 2935926
Alignment:
Q  381 cggatagcacttaagtgatatagagttgagtgacattgatc---aatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattg 477  Q
    ||||||||| ||| |||||||||||||| |||||||| ||    ||||| || |||| |||| ||| |||||| ||||||||||||||||||| ||||||    
T  2935825 cggatagcatttaggtgatatagagttgtgtgacattaattgttaatcacaatgtcataatgtttgtaaaagatagagaaacacaaacattgtgacattg 2935924  T
Q  478 tg 479  Q
    ||    
T  2935925 tg 2935926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 26662511 - 26662422
Alignment:
Q  410 gtgacattgatcaa-tcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||| |||| ||| || |||||||| ||||  ||| |||||||||||||| || ||| ||||||||||||| |||||||||||||    
T  26662511 gtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaa 26662422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 26934106 - 26934017
Alignment:
Q  410 gtgacattgatcaa-tcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||| |||| ||| || |||||||| ||||  ||| |||||||||||||| || ||| ||||||||||||| |||||||||||||    
T  26934106 gtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaa 26934017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 38134411 - 38134488
Alignment:
Q  421 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||| || ||||||||||| |  ||||||| |||||||||| |||||| |||||||||||||||||| ||| ||||    
T  38134411 caatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattggccaatatcatccaa 38134488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 2093964 - 2094052
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||||||||||| || |||| ||||||||  |||||||||||||||||| |||| | | | ||||||| | |||| ||||||||    
T  2093964 gtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattatgatagtgtgattagtcaatatcacccaa 2094052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 470
Target Start/End: Complemental strand, 2953301 - 2953241
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 470  Q
    |||||||||  |||||| || |||||||||||||  |||||||||||||||||| ||||||    
T  2953301 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 2953241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 494
Target Start/End: Complemental strand, 1638521 - 1638484
Alignment:
Q  457 aacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  1638521 aacacaaacattgtgacattgtgattggccaatatcac 1638484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 2953266 - 2953302
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  2953266 cacaagcattgtgacattgtgattggccaatgtcacc 2953302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 29699443 - 29699479
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  29699443 cacaagcattgtgacattgtgattggccaatgtcacc 29699479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 395 - 498
Target Start/End: Complemental strand, 63883 - 63780
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||||||||||||| |||||||||  |||||| || |||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  63883 gtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 63784  T
Q  495 ccaa 498  Q
    ||||    
T  63783 ccaa 63780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 498
Target Start/End: Original strand, 63833 - 63872
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  63833 cacaagcattgtgacattgtgattggccaatgtcacccaa 63872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 385 - 498
Target Start/End: Original strand, 8337854 - 8337966
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    ||||||||| |||||||||||||| ||||||||| ||||||| || ||||||||| |||  |||||||||||||||||||||||||  ||||||||||||    
T  8337854 tagcacttaggtgatatagagttg-gtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattgg 8337952  T
Q  485 ccaatgtcacccaa 498  Q
     |||||||||||||    
T  8337953 tcaatgtcacccaa 8337966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 380 - 495
Target Start/End: Complemental strand, 4609137 - 4609022
Alignment:
Q  380 acggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtg 479  Q
    |||||||| ||||  |||| ||||||||| ||||||||| ||||||| || |||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  4609137 acggatagtacttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtg 4609038  T
Q  480 attggccaatgtcacc 495  Q
    || || ||||||||||    
T  4609037 atgggtcaatgtcacc 4609022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 382 - 491
Target Start/End: Complemental strand, 9157449 - 9157340
Alignment:
Q  382 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgat 481  Q
    |||||||||||  |||| |||||||||  |||||||||||||||| ||  ||||||||||||  |||||||||||||||||| |||||| ||||||||||    
T  9157449 ggatagcacttgtgtgacatagagttggttgacattgatcaatcacaatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgat 9157350  T
Q  482 tggccaatgt 491  Q
    ||| ||||||    
T  9157349 tggtcaatgt 9157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 29371479 - 29371394
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||| ||||| |||||| || |||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29371479 gtgatattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcacc 29371394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 385 - 500
Target Start/End: Original strand, 741504 - 741619
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    ||||||||  |||||||||| ||  |||||||||  |||||| || |||||||||||||  |||||||||||||||||| |||||| |||||||||| |     
T  741504 tagcacttgcgtgatatagaattaggtgacattgcccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatcga 741603  T
Q  485 ccaatgtcacccaaat 500  Q
    ||||||||||||||||    
T  741604 ccaatgtcacccaaat 741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 400 - 495
Target Start/End: Complemental strand, 37155167 - 37155072
Alignment:
Q  400 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||| |||||||||  |||||| || |||||||| ||||  |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  37155167 atagagttgggtgacattggccaatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 37155072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 498
Target Start/End: Complemental strand, 34062330 - 34062232
Alignment:
Q  400 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||| |||||||||| |||||| || ||||||||| |||  ||||||||||||||| || ||||||  ||||||||||||||||||||||||||    
T  34062330 atagagttgggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgattggccaatgtcacccaa 34062232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 463
Target Start/End: Original strand, 1819485 - 1819569
Alignment:
Q  379 gacggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaa 463  Q
    |||||||||||||| | ||| ||||||||| ||||||||||||||||| || |||||||||||||  ||||||||||||||||||    
T  1819485 gacggatagcacttgaatgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaa 1819569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 409 - 494
Target Start/End: Original strand, 17127590 - 17127675
Alignment:
Q  409 agtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    ||||||||||| |||||| || |||||||||||||  |||||||||||||||||| |||||| ||||| ||||||| |||||||||    
T  17127590 agtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcac 17127675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 29179624 - 29179709
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||| ||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  29179624 gtgacactgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 29179709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 385 - 498
Target Start/End: Original strand, 46333948 - 46334061
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    ||||||||  |||| |||||||||  ||||||||  |||||| || |||||||||||||  ||||||||| |||||||| |||||| |||||||||||||    
T  46333948 tagcacttgggtgacatagagttggatgacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattgg 46334047  T
Q  485 ccaatgtcacccaa 498  Q
     |||||||| ||||    
T  46334048 tcaatgtcatccaa 46334061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 48993944 - 48994029
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||| ||||||||||    
T  48993944 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacc 48994029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 495
Target Start/End: Complemental strand, 47303521 - 47303421
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||| ||||||||  ||||||||| ||||||| || ||||||||| |||  ||||||||||||||||||||||| | ||||||||||||| |||| ||||    
T  47303521 gtgacatagagttaggtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaatatcac 47303422  T
Q  495 c 495  Q
    |    
T  47303421 c 47303421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 421 - 495
Target Start/End: Original strand, 1091582 - 1091656
Alignment:
Q  421 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||| || |||||||||||||  ||||||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  1091582 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcacc 1091656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 421 - 495
Target Start/End: Original strand, 32540786 - 32540860
Alignment:
Q  421 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||| || |||||||||||||  |||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  32540786 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtcacc 32540860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 498
Target Start/End: Original strand, 5694888 - 5695004
Alignment:
Q  381 cggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtga 480  Q
    |||||| ||||| ||||| ||||||||  ||||||||| ||||||| ||  | | ||||||||  ||||||||||||||||||| ||||| ||||||| |    
T  5694888 cggataacacttgagtgacatagagtttggtgacattggtcaatcacaatatta-aatgcttgtgaaagagagagaaacacaaatattgtgacattgtaa 5694986  T
Q  481 ttggccaatgtcacccaa 498  Q
    ||| ||||||||||||||    
T  5694987 ttgaccaatgtcacccaa 5695004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 491
Target Start/End: Complemental strand, 5995480 - 5995399
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgt 491  Q
    |||||||||| |||||| || | |||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||    
T  5995480 gtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgt 5995399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 33219684 - 33219596
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||||||||||| || |||| ||||||||  ||||||||| |||||||| |||||| ||||||||||||  |||||||| ||||    
T  33219684 gtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaatgtcatccaa 33219596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 494
Target Start/End: Original strand, 48604960 - 48605058
Alignment:
Q  396 tgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    ||||||||||||  ||||||||| ||||||| || ||||||||  |||  |||||||||||||| ||| |||||| ||||| | |||||||||||||||    
T  48604960 tgatatagagttaggtgacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgtcac 48605058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 494
Target Start/End: Complemental strand, 48498550 - 48498442
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    ||||||||  |||| ||||||||| |||||||||| |||||| || || || |||||||  |||||||||||||||||||||||||   ||| ||||||     
T  48498550 tagcacttgggtgacatagagttg-gtgacattgaccaatcacaatgttaccatgcttgtgaaagagagagaaacacaaacattgtggtattatgattga 48498452  T
Q  485 ccaatgtcac 494  Q
    ||||||||||    
T  48498451 ccaatgtcac 48498442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 49444940 - 49445026
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||| ||||||||| || || ||||||||||  |  ||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  49444940 gtgacatcgatcaatcacaatgttacaatgcttgtga--gagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaa 49445026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 495
Target Start/End: Original strand, 36290456 - 36290519
Alignment:
Q  432 tcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||||||  ||||||||||||||||||| ||||| ||||||||||||| ||||| ||||    
T  36290456 tcacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccacc 36290519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 495
Target Start/End: Complemental strand, 45728396 - 45728313
Alignment:
Q  412 gacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||| ||||||| || |||| ||||||||  |||||||||||||||||| |||||| | ||||||||||| |||| |||||    
T  45728396 gacattggtcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcacc 45728313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 432 - 498
Target Start/End: Complemental strand, 15220900 - 15220834
Alignment:
Q  432 tcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||||||  |||||||||||||||||| |||||| | || ||||||| ||||||||||||||    
T  15220900 tcacaatgcttgtgaaagagagagaaacacaagcattgtgagatcgtgattgaccaatgtcacccaa 15220834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 44706834 - 44706896
Alignment:
Q  433 cacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||  |||||||||||||||||| |||||   |||||||||||||||||||||||    
T  44706834 cacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcacc 44706896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 21630117 - 21630068
Alignment:
Q  446 aaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  21630117 aaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcacc 21630068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 498
Target Start/End: Original strand, 38674525 - 38674618
Alignment:
Q  403 gagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||| |||| ||||  |||||| || |||||||||||||  ||||||  |||||||||| |||||| ||||| |||||||||||| ||||||||    
T  38674525 gagttgggtgatattggccaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgacattatgattggccaatatcacccaa 38674618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 28395708 - 28395663
Alignment:
Q  450 agagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcacc 28395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 466
Target Start/End: Original strand, 28928781 - 28928862
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaaca 466  Q
    ||||||||  |||| ||||||||  |||||||||  |||||| || |||||| ||||||  |||||||||||||||||||||    
T  28928781 tagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacagtgcttgtgaaagagagagaaacacaaaca 28928862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 498
Target Start/End: Original strand, 34062285 - 34062324
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  34062285 cacaaacattgtgacattgtgattggtcaatgtcacccaa 34062324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 495
Target Start/End: Complemental strand, 46932061 - 46932023
Alignment:
Q  457 aacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  46932061 aacacaaacattgtggcattgtgattggccaatgtcacc 46932023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 498
Target Start/End: Complemental strand, 48823941 - 48823908
Alignment:
Q  465 cattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||| |||||||||||||||||||||||||||    
T  48823941 cattgtgacattgtgattggccaatgtcacccaa 48823908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 8337913 - 8337877
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||| |||||||||||| |||||||||||    
T  8337913 cacaaacattgtgacattgtgattgaccaatgtcacc 8337877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 498
Target Start/End: Original strand, 37155129 - 37155161
Alignment:
Q  466 attgttacattgtgattggccaatgtcacccaa 498  Q
    ||||| |||||||||||||||||||||||||||    
T  37155129 attgtgacattgtgattggccaatgtcacccaa 37155161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 47303471 - 47303507
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||| |||||||||||| |||||||||||    
T  47303471 cacaaacattgtgacattgtgattgaccaatgtcacc 47303507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 382 - 494
Target Start/End: Original strand, 55089995 - 55090107
Alignment:
Q  382 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgat 481  Q
    ||||| |||||  |||| ||||||||||||||||||| ||||||| || |||||||||||||  ||||||||||| |||||| |||||| ||||||||||    
T  55089995 ggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgat 55090094  T
Q  482 tggccaatgtcac 494  Q
    || ||||||||||    
T  55090095 tgaccaatgtcac 55090107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 495
Target Start/End: Complemental strand, 40789320 - 40789205
Alignment:
Q  380 acggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtg 479  Q
    |||| ||||||||  |||| ||||||||  |||| ||||  |||||| || |||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  40789320 acgggtagcacttgggtgacatagagtttggtgatattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtg 40789221  T
Q  480 attggccaatgtcacc 495  Q
    ||||||||||||||||    
T  40789220 attggccaatgtcacc 40789205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 380 - 498
Target Start/End: Original strand, 47404582 - 47404700
Alignment:
Q  380 acggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtg 479  Q
    |||| ||||||||  |||| ||||||||| ||||||||| ||||||| || |||||||||||||  |||||||||||||| ||| ||||||  |||||||    
T  47404582 acgggtagcacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattgtggcattgtg 47404681  T
Q  480 attggccaatgtcacccaa 498  Q
    |||| ||||||||||||||    
T  47404682 attgaccaatgtcacccaa 47404700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 51265556 - 51265471
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| ||||||||| |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  51265556 gtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 51265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 42375121 - 42375033
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||||||||||| || |||||||||||||  |||||||||||||||||| ||||||  ||||||||||| ||||||||||||||    
T  42375121 gtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcacccaa 42375033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 498
Target Start/End: Complemental strand, 52028670 - 52028572
Alignment:
Q  400 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||| ||| |||||||||  |||||| || |||||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  52028670 atagaattgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaatatcacccaa 52028572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 23444296 - 23444381
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  23444296 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 23444381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 47661953 - 47661868
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  47661953 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 47661868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 47762719 - 47762635
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    ||||||||| |||| ||||| |||||||||||||  ||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  47762719 gtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcac 47762635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 6271813 - 6271728
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||  |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  6271813 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 6271728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 498
Target Start/End: Original strand, 31430463 - 31430573
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    ||||||||  |||| ||||||||| |||||||||| |||||| || ||||||||||||   ||||||||||||||||||||   ||  |||||| |||||    
T  31430463 tagcacttgggtgacatagagttgggtgacattgaccaatcacaatgtcacaatgcttatgaaagagagagaaacacaaac---gtggcattgtaattgg 31430559  T
Q  485 ccaatgtcacccaa 498  Q
    ||||||||||||||    
T  31430560 ccaatgtcacccaa 31430573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 395 - 470
Target Start/End: Original strand, 45591422 - 45591497
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 470  Q
    |||||||||||||| ||| ||||  |||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  45591422 gtgatatagagttgggtggcattcgtcaatcataatgtcacaatgcttgtgaaagagagagaaacacaaacattgt 45591497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 53954721 - 53954633
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||  |||| | || |||||||||||||  |||||| ||||||||| | |||||| |||||||||||||||||||||||||||    
T  53954721 gtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgattggccaatgtcacccaa 53954633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 432 - 495
Target Start/End: Original strand, 30861823 - 30861886
Alignment:
Q  432 tcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  30861823 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 30861886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 31532716 - 31532801
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||| ||||||| || ||||||||   || |||||||||||||| ||||||||||| || |||||||||| ||||||||||    
T  31532716 gtgacattgttcaatcacaatgtcacaatatatgtaaaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcacc 31532801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 35682277 - 35682192
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| | |||| || |||||||||||||  ||||| ||||||||||||  ||| | ||||||||||||||||||||||||    
T  35682277 gtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcacc 35682192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 50384107 - 50384192
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 470  Q
    ||||||||  |||| ||||||||| |||||||||  |||||| || |||||||||||||  |||||||||||||||||| ||||||    
T  50384107 tagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgt 50384192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 493
Target Start/End: Original strand, 26186043 - 26186124
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtca 493  Q
    ||||||||| ||||||| || |||||||||||||  ||||||  |||||||||| |||||| | ||||||||||||||||||||    
T  26186043 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgaaattgtgattggccaatgtca 26186124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 468
Target Start/End: Original strand, 28693922 - 28694008
Alignment:
Q  382 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacatt 468  Q
    |||||||||||  |||| ||| |||||  ||||||||| |||||| ||  |||||||| |||  |||||||||||||||||||||||    
T  28693922 ggatagcacttgggtgacataaagttggatgacattgaccaatcacaatatcacaatgtttgtgaaagagagagaaacacaaacatt 28694008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 24006072 - 24006157
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 470  Q
    ||||||||  |||| ||| ||||| |||||||||  |||||| || | |||||||||||  ||||||||||||||| |||||||||    
T  24006072 tagcacttgggtgacatacagttgggtgacattggccaatcacaatgacacaatgcttgtgaaagagagagaaacataaacattgt 24006157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 55090135 - 55090074
Alignment:
Q  382 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttg 443  Q
    ||||| |||||  |||| ||||||||||||||||||| ||||||| || |||||||||||||    
T  55090135 ggatatcacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttg 55090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 55089879 - 55089935
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgct 441  Q
    ||||| ||| |||| ||||||||||||||||||| ||||||| || |||||||||||    
T  55089879 tagcatttaggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgct 55089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 470
Target Start/End: Original strand, 25818401 - 25818460
Alignment:
Q  411 tgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 470  Q
    |||||||| ||||||| || ||||||||| |||  |||||||||||||||||| ||||||    
T  25818401 tgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaacacaatcattgt 25818460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 498
Target Start/End: Complemental strand, 50384167 - 50384128
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  50384167 cacaagcattgtgacattgtgattggccaatgtcacccaa 50384128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 498
Target Start/End: Original strand, 52028625 - 52028664
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  52028625 cacaagcattgtgacattgtgattggccaatgtcacccaa 52028664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 6271778 - 6271814
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  6271778 cacaagcattgtgacattgtgattggccaatgtcacc 6271814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 395 - 495
Target Start/End: Complemental strand, 15011406 - 15011306
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||| |||||||||||||||||||  |||||| || |||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  15011406 gtgacatagagttgagtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatatcac 15011307  T
Q  495 c 495  Q
    |    
T  15011306 c 15011306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 402 - 498
Target Start/End: Complemental strand, 2828703 - 2828607
Alignment:
Q  402 agagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||| |||||||||  |||||| || ||||||||||||   |||||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  2828703 agagttgggtgacattggccaatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattggccaatgtcacccaa 2828607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 6217251 - 6217339
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||  |||||| || | |||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  6217251 gtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaa 6217339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 395 - 498
Target Start/End: Complemental strand, 2894089 - 2893986
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||| |||||||||  |||||||| ||||||| |  |||||||||||||  ||||||||||||| |||| |||||| | |||||||||||||||||||||    
T  2894089 gtgacatagagttggatgacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtcac 2893990  T
Q  495 ccaa 498  Q
    ||||    
T  2893989 ccaa 2893986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 38933687 - 38933610
Alignment:
Q  421 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||| |||||||||||||  |||||||||||||||||| ||||||  |||||||||||| |||||||||||||    
T  38933687 caatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacccaa 38933610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 14229380 - 14229467
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||| ||||||| || |||||||||||||  |||||||||||||||||| |||||| ||||||||||| |||||||||| ||||    
T  14229380 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatt-gccaatgtcatccaa 14229467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 29925618 - 29925685
Alignment:
Q  431 gtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||| ||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  29925618 gtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaa 29925685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 495
Target Start/End: Original strand, 37762019 - 37762113
Alignment:
Q  401 tagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||||||||||||| |||||| || ||| |||||||||  ||||||| |||||||||| |||||| | |||||||||| || ||||||||    
T  37762019 tagagttgagtgacattgaccaatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtgatattgtgattgacccatgtcacc 37762113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 491
Target Start/End: Original strand, 14470619 - 14470700
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgt 491  Q
    |||||||||| |||||| || ||  |||||||||  ||||||||||||||||||||||||| |||||||||||||| |||||    
T  14470619 gtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggctaatgt 14470700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 16514535 - 16514450
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| |||| |  ||| |||||||||||||||||||    
T  16514535 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcacc 16514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 37961817 - 37961729
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||| |||||| || | |||||||||||  ||||||||||||||||||||||| |  ||||||||| || |||||||||||||    
T  37961817 gtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatggcattgtgatcggtcaatgtcacccaa 37961729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 495
Target Start/End: Complemental strand, 6722051 - 6721977
Alignment:
Q  421 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||| || ||||||||| |||  |||||||||||||||||| |||||| | ||||||||||| ||||||||||    
T  6722051 caatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatgtcacc 6721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 29508741 - 29508803
Alignment:
Q  433 cacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||  |||||||||||||||||| |||||   |||||||||||||||||||||||    
T  29508741 cacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcacc 29508803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 491
Target Start/End: Complemental strand, 24116032 - 24115950
Alignment:
Q  409 agtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgt 491  Q
    ||||| |||| ||||||| || ||| |||||||||  |||||| | ||||||||  |||||| ||||||||||||||||||||    
T  24116032 agtgatattggtcaatcacaatgtcgcaatgcttgtgaaagagtgtgaaacacaggcattgtaacattgtgattggccaatgt 24115950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 14464554 - 14464615
Alignment:
Q  382 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttg 443  Q
    |||||||||||  |||| ||||||||||||||||||| ||||||| || |||||||| ||||    
T  14464554 ggatagcacttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaatacttg 14464615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 495
Target Start/End: Original strand, 9172993 - 9173093
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||| ||||||||| ||||||||| |  |||| || | || |||||||  |||||| ||||||| |||| ||||||  ||||||||||||||||| ||||    
T  9172993 gtgacatagagttgggtgacattggttcatcagaatgccataatgcttataaaagaaagagaaatacaagcattgtggcattgtgattggccaatatcac 9173092  T
Q  495 c 495  Q
    |    
T  9173093 c 9173093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 485
Target Start/End: Complemental strand, 14892371 - 14892297
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggc 485  Q
    ||||||||||||||||| || || ||||| |||   ||||||||||||| ||||||| ||| ||||||||||||||    
T  14892371 gtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaagacaaaca-tgtgacattgtgattggc 14892297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 498
Target Start/End: Original strand, 2828666 - 2828699
Alignment:
Q  465 cattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||| |||||||||||||||||||||||||||    
T  2828666 cattgtgacattgtgattggccaatgtcacccaa 2828699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 472 - 500
Target Start/End: Original strand, 1992266 - 1992294
Alignment:
Q  472 acattgtgattggccaatgtcacccaaat 500  Q
    |||||||||||||||||||||||||||||    
T  1992266 acattgtgattggccaatgtcacccaaat 1992294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 495
Target Start/End: Original strand, 8243390 - 8243500
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    ||||||||  |||| ||||||||||||||||||||||||||| || | |||||||||||  |||||||||||||||||| ||||||  |||||||||||     
T  8243390 tagcacttgggtgacatagagttgagtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattga 8243489  T
Q  485 ccaatgtcacc 495  Q
    |||| ||||||    
T  8243490 ccaacgtcacc 8243500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 35440996 - 35441081
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  35440996 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 35441081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 5033272 - 5033187
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||| ||||||  |||||||||||| ||||||||||    
T  5033272 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacc 5033187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 409 - 493
Target Start/End: Complemental strand, 4958710 - 4958627
Alignment:
Q  409 agtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtca 493  Q
    ||||||||||| |||||| || |||||||| ||||  ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  4958710 agtgacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtca 4958627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 10086868 - 10086784
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||||||||| |||||| || ||||||||| |||  ||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  10086868 gtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtcac 10086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 39851066 - 39850978
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||| |||||| ||  | | ||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  39851066 gtgacattgaccaatcacaatattataatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaa 39850978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 409 - 498
Target Start/End: Complemental strand, 6296717 - 6296628
Alignment:
Q  409 agtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||  ||||| |||| |||||||| ||||  |||||||||||||||||| |||| | ||||||||||||| |||||||||||||    
T  6296717 agtgacattagtcaattataatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaa 6296628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 45191154 - 45191239
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||||| ||||| || | ||||||||||   ||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  45191154 gtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtcacc 45191239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 8796533 - 8796449
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||||||||| |||||| || |||||||||||||  ||||| |||||||||||| |||||| |||||||||||| ||||| ||||    
T  8796533 gtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgattgaccaatatcac 8796449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 483
Target Start/End: Complemental strand, 34229777 - 34229679
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattg 483  Q
    ||||||||  |||| ||||||||  ||||||||| ||||||| ||  ||||||||||||  |||||||||||||||||| |||| | ||||||||||||    
T  34229777 tagcacttgtgtgacatagagttaggtgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattg 34229679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 33841618 - 33841703
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| |||||| |  |||||||||||||  |||||||||||||||||| ||||||  |||| ||||||| ||||||||||    
T  33841618 gtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatgtcacc 33841703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 5667208 - 5667123
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||  |||| | || |||| ||||||||  ||||||||||||| |||| |||||| |||||||||||| |||||||||||    
T  5667208 gtgacattggccaattacaatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcacc 5667123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 34541805 - 34541890
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 470  Q
    ||||||||  |||| ||| ||||| |||||||||  |||||||||  ||||||||||||  |||||||||||||||||| ||||||    
T  34541805 tagcacttgggtgacataaagttgggtgacattggccaatcataatatcacaatgcttgtgaaagagagagaaacacaagcattgt 34541890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 493
Target Start/End: Complemental strand, 2581895 - 2581853
Alignment:
Q  451 gagagaaacacaaacattgttacattgtgattggccaatgtca 493  Q
    ||||||||||||| ||||||  |||||||||||||||||||||    
T  2581895 gagagaaacacaagcattgtggcattgtgattggccaatgtca 2581853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 470
Target Start/End: Complemental strand, 31159951 - 31159902
Alignment:
Q  421 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgt 470  Q
    ||||||||| |||||||||||||  ||||||||||||||| ||| |||||    
T  31159951 caatcataatgtcacaatgcttgtgaaagagagagaaacaaaaatattgt 31159902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 10086833 - 10086869
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  10086833 cacaaacattgtgacattgtgattggtcaatgtcacc 10086869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 458
Target Start/End: Original strand, 35031641 - 35031689
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaa 458  Q
    ||||||||||||||||| || ||| |||||||||  |||||||||||||    
T  35031641 gtgacattgatcaatcacaatgtcgcaatgcttgtgaaagagagagaaa 35031689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 382 - 498
Target Start/End: Original strand, 47677254 - 47677370
Alignment:
Q  382 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgat 481  Q
    ||||| |||||  |||| ||||||||  |||||||||| | |||| || |||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  47677254 ggataacacttgtgtgacatagagtttggtgacattgaccgatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgat 47677353  T
Q  482 tggccaatgtcacccaa 498  Q
    ||  |||||||||||||    
T  47677354 tgatcaatgtcacccaa 47677370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 495
Target Start/End: Original strand, 43139711 - 43139821
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    |||||||| ||||| ||||||||| ||||||| | ||||||| || |||| ||||||||  |||||||||||||||||| ||||||  |||||| |||||    
T  43139711 tagcacttgagtgacatagagttgggtgacatcggtcaatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattgg 43139810  T
Q  485 ccaatgtcacc 495  Q
    |||||||||||    
T  43139811 ccaatgtcacc 43139821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 51046100 - 51046185
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||||||||||| ||||||||| |||  |||||||||||||||||| |||| |  |||||||||||||||||||||||    
T  51046100 gtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtcacc 51046185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 1801473 - 1801561
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||  |||||| || | |||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  1801473 gtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaa 1801561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 377 - 495
Target Start/End: Complemental strand, 55223376 - 55223258
Alignment:
Q  377 atgacggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacatt 476  Q
    ||||||||||||||||  |||| |||||||| ||||| |||| |||||||||| |||||||||||||  ||||||||||||||| ||  ||| | | |||    
T  55223376 atgacggatagcacttgggtgacatagagttaagtgatattggtcaatcataatgtcacaatgcttgtgaaagagagagaaacataagtattctaatatt 55223277  T
Q  477 gtgattggccaatgtcacc 495  Q
    ||||||| ||||| |||||    
T  55223276 gtgattgaccaatatcacc 55223258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 50550086 - 50550001
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||||||||||| |||| |||| |||  |||||||||||||||||| |||||| | ||||||||||| ||||||||||    
T  50550086 gtgacattgatcaatcataatgtcataatgtttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcacc 50550001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 494
Target Start/End: Original strand, 30476473 - 30476585
Alignment:
Q  382 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgat 481  Q
    |||||||||||  |||| | |||| |  |||||||||  |||||| || |||||||||||||  |||||||||||||||||| |||||| ||||||||||    
T  30476473 ggatagcacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgat 30476572  T
Q  482 tggccaatgtcac 494  Q
    || ||||||||||    
T  30476573 tgaccaatgtcac 30476585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 385 - 489
Target Start/End: Complemental strand, 33689312 - 33689208
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    ||||||||  |||| || |||||| |||||||||  |||||| || |||||||||||||  |||||||||||||||||| |||||| ||||||||||||     
T  33689312 tagcacttgggtgacattgagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattga 33689213  T
Q  485 ccaat 489  Q
    |||||    
T  33689212 ccaat 33689208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 29031731 - 29031826
Alignment:
Q  400 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||  |||| |||| ||||||| || |||||||||||||  ||||||||||||||||||||||||| ||||||| |||| ||||| |||||    
T  29031731 atagagttaggtgatattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtaattgaccaatatcacc 29031826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 41753075 - 41752990
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||  |||||| || | |||||||||||  ||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  41753075 gtgacattggccaatcacaatgccacaatgcttgtgaaagagaaagaaacacaaacattgtggcattgtgattggccaatgtcacc 41752990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 400 - 495
Target Start/End: Complemental strand, 18321772 - 18321677
Alignment:
Q  400 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||  |||||||| ||||||| || |||||||||| ||  ||| ||||| |||||||||| |||| |||||||||||| |||||||||||    
T  18321772 atagagttggatgacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcacc 18321677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 489
Target Start/End: Original strand, 47492074 - 47492153
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaat 489  Q
    |||||||||  |||||| || |||||||||||||  ||| |||||||||||||| |||||| ||||||||||||||||||    
T  47492074 gtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaat 47492153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 411 - 495
Target Start/End: Original strand, 30734430 - 30734514
Alignment:
Q  411 tgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||| | |||| || |||||||||||||  ||||| ||||||||||||  ||| | ||||||||||||||||||||||||    
T  30734430 tgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcacc 30734514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 498
Target Start/End: Original strand, 39385751 - 39385803
Alignment:
Q  446 aaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||    
T  39385751 aaagagagagaaatacaaatattgtaacattgtgattggccaatgtcacccaa 39385803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 493
Target Start/End: Complemental strand, 50524803 - 50524730
Alignment:
Q  420 tcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtca 493  Q
    ||||||| || || || |||||||  ||||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  50524803 tcaatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgattggtcaatgtca 50524730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 1801566 - 1801610
Alignment:
Q  454 agaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||||||||||  ||||||||||||||||||||||||||    
T  1801566 agaaacacaaacattgtggcattgtgattggccaatgtcacccaa 1801610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 494
Target Start/End: Original strand, 30580783 - 30580867
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||| ||||| ||||||||| ||||||||  |||  ||||||| |||||||||| || ||| |||||||||||| ||||||||||    
T  30580783 gtgatattgaccaatcataatgtcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcac 30580867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 47677394 - 47677337
Alignment:
Q  382 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatg 439  Q
    |||||||||||  |||| ||||||||| ||||||||||||||||| || |||||||||    
T  47677394 ggatagcacttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatg 47677337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 498
Target Start/End: Original strand, 49418693 - 49418806
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    ||||||||  |||| ||||||||| |||| |||| ||||||| || |||| |||  |||  |||||||||||||||||| |||| | | ||| | ||||     
T  49418693 tagcacttgggtgacatagagttgggtgatattggtcaatcacaatgtcataatatttgtgaaagagagagaaacacaagcattatgatattataattga 49418792  T
Q  485 ccaatgtcacccaa 498  Q
    ||||||||||||||    
T  49418793 ccaatgtcacccaa 49418806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 498
Target Start/End: Original strand, 33689252 - 33689291
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  33689252 cacaagcattgtgacattgtgattggccaatgtcacccaa 33689291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 498
Target Start/End: Original strand, 49414501 - 49414538
Alignment:
Q  461 caaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  49414501 caaacattgtgacattgtaattggccaatgtcacccaa 49414538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 30476536 - 30476500
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  30476536 cacaagcattgtgacattgtgattggccaatgtcacc 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 47492109 - 47492073
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  47492109 cacaagcattgtgacattgtgattggccaatgtcacc 47492073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 495
Target Start/End: Original strand, 27028795 - 27028905
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattgg 484  Q
    ||||||||  |||| ||||||||| || ||||||  |||||| || ||||||||||||   ||||||||||||||||||||||||| ||||||||||||     
T  27028795 tagcacttgggtgacatagagttgggtaacattggacaatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattga 27028894  T
Q  485 ccaatgtcacc 495  Q
    |||||||||||    
T  27028895 ccaatgtcacc 27028905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 395 - 498
Target Start/End: Original strand, 29053326 - 29053429
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||| ||||||||  |||||||||  |||||| || | | |||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  29053326 gtgacatagagtttggtgacattggccaatcacaatgcctcaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 29053425  T
Q  495 ccaa 498  Q
    ||||    
T  29053426 ccaa 29053429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 11016980 - 11016895
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| |||||| || ||||||||| |||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  11016980 gtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 11016895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 15027653 - 15027568
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| |||||| || |||||||||||||  |||||||||||||||||||||||||   ||||||||||| ||||||||||    
T  15027653 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcacc 15027568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 7671961 - 7672025
Alignment:
Q  433 cacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcaccca 497  Q
    |||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  7671961 cacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcaccca 7672025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 380 - 498
Target Start/End: Complemental strand, 4649463 - 4649343
Alignment:
Q  380 acggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagaga--aacacaaacattgttacattg 477  Q
    ||||| |||| || ||||| ||||||||  ||||||||| ||||||| || ||||| |||||||  |||||||||||  ||||||| ||||||  |||||    
T  4649463 acggacagcaattgagtgacatagagtttggtgacattggtcaatcacaatgtcacgatgcttgtgaaagagagagagaaacacaagcattgtagcattg 4649364  T
Q  478 tgattggccaatgtcacccaa 498  Q
    |||||| ||||||||||||||    
T  4649363 tgattgaccaatgtcacccaa 4649343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 410 - 491
Target Start/End: Complemental strand, 38975916 - 38975835
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgt 491  Q
    ||||||||||||||| |||| | |||||||||||  |||||||||||||||||| ||||||  ||||||||||| |||||||    
T  38975916 gtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgt 38975835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 495
Target Start/End: Original strand, 34854707 - 34854807
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||| ||||||||  |||||||||  |||||| || | |||||||||||  ||||||| |||||||||||||||||  ||||||||||| ||||||||||    
T  34854707 gtgacatagagtttggtgacattggccaatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcac 34854806  T
Q  495 c 495  Q
    |    
T  34854807 c 34854807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 436 - 495
Target Start/End: Original strand, 22764753 - 22764812
Alignment:
Q  436 aatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  22764753 aatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcacc 22764812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 41018245 - 41018340
Alignment:
Q  400 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||| |||||||||  |||||| || ||| |||||||||  ||||||||||||||| || ||||||  |||||||||||| ||||||||||    
T  41018245 atagagttgggtgacattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcacc 41018340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 489
Target Start/End: Complemental strand, 48000848 - 48000769
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaat 489  Q
    |||||||||| |||||| || | |||||||  ||  |||||||||||||||||||||||||  |||||||||||||||||    
T  48000848 gtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaacacaaacattgtggcattgtgattggccaat 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 42628395 - 42628318
Alignment:
Q  421 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||| || ||| |||||||||  ||||||||||||||| || ||||||  |||||||||||| |||||||||||||    
T  42628395 caatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcacccaa 42628318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Original strand, 45231913 - 45231962
Alignment:
Q  446 aaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||||    
T  45231913 aaagagagagaaacaaaagcattgtaacattgtgattggccaatgtcacc 45231962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 4290656 - 4290571
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||  |||||| || |||||||| ||||  |||||||||||||||| | ||||||  ||||||||||| ||||| |||||    
T  4290656 gtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgattgaccaatatcacc 4290571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 30217504 - 30217564
Alignment:
Q  433 cacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtca 493  Q
    |||||||||||  ||||||||||||||| ||||||| | | |||||||||||| |||||||    
T  30217504 cacaatgcttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtca 30217564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 10419533 - 10419480
Alignment:
Q  446 aaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaaa 499  Q
    ||||||||||||||||||  ||||| ||||| |||||| |||||||||| ||||    
T  10419533 aaagagagagaaacacaagtattgtaacattatgattgaccaatgtcactcaaa 10419480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 27028795 - 27028754
Alignment:
Q  454 agaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||| |||||| |||||||||||| |||||||||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcacc 27028754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 11016945 - 11016981
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  11016945 cacaaacattgtgacattgtgattggtcaatgtcacc 11016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 458
Target Start/End: Original strand, 48000721 - 48000769
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaa 458  Q
    ||||||||||||||||| || | |||||||||||  |||||||||||||    
T  48000721 gtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 551182 - 551277
Alignment:
Q  400 atagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||| ||||||||| ||||||| || | ||||||| |||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  551182 atagagttgggtgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacc 551277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 494
Target Start/End: Original strand, 10521847 - 10521960
Alignment:
Q  381 cggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtga 480  Q
    ||||||||||||  |||| ||||||||  |||||||||  |||||| || ||||||||||||   |||||||||||||||||| |||| | |||||||||    
T  10521847 cggatagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtga 10521946  T
Q  481 ttggccaatgtcac 494  Q
    ||| ||||||||||    
T  10521947 ttgaccaatgtcac 10521960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 24618628 - 24618716
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    ||||||||||||||||| || |||| |||||||   |||||||||||||||||| |||||| ||||||||||||| ||| |||||||||    
T  24618628 gtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgattggtcaacgtcacccaa 24618716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 12343211 - 12343123
Alignment:
Q  410 gtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||  |||||| || |||||||||||||  |||||||||||||||||| ||||||  ||||||||||| | ||||||||||||    
T  12343211 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgactaatgtcacccaa 12343123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 498
Target Start/End: Complemental strand, 31654380 - 31654328
Alignment:
Q  446 aaagagagagaaacacaaacattgttacattgtgattggccaatgtcacccaa 498  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  31654380 aaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaa 31654328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 495
Target Start/End: Complemental strand, 17750992 - 17750928
Alignment:
Q  431 gtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||||||||||  ||||||||| ||| ||||||||||| |||||||||||| |||||||||||    
T  17750992 gtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatgtcacc 17750928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 494
Target Start/End: Complemental strand, 24587551 - 24587488
Alignment:
Q  431 gtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcac 494  Q
    |||||||||||||  ||| || ||||||||||| |||||| |||||||||||| ||||||||||    
T  24587551 gtcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcac 24587488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 31654307 - 31654365
Alignment:
Q  385 tagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttg 443  Q
    ||||||||  |||||||||||||| |||||||||  |||||| || |||||||||||||    
T  31654307 tagcacttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttg 31654365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 489
Target Start/End: Complemental strand, 13043546 - 13043489
Alignment:
Q  432 tcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaat 489  Q
    ||||||||||||  |||||||||||||||||| |||||| |||||  ||||| |||||    
T  13043546 tcacaatgcttgtgaaagagagagaaacacaagcattgtgacatttcgattgaccaat 13043489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 24618740 - 24618679
Alignment:
Q  382 ggatagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttg 443  Q
    |||||||||||  |||| ||||||||| ||||| |||| |||||| || |||||||||||||    
T  24618740 ggatagcacttgggtgacatagagttgggtgacgttgaccaatcacaatgtcacaatgcttg 24618679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 2315325 - 2315381
Alignment:
Q  404 agttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaaca 460  Q
    ||||| ||||||||||||||||| || ||||||||| |||  |||||||| ||||||    
T  2315325 agttgggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagagcgaaaca 2315381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 10521975 - 10521927
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttg 443  Q
    |||| ||||||||||||||||||| ||||||| || |||| ||||||||    
T  10521975 gtgacatagagttgagtgacattggtcaatcacaatgtcataatgcttg 10521927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 12343176 - 12343212
Alignment:
Q  459 cacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  12343176 cacaagcattgtgacattgtgattggccaatgtcacc 12343212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 421 - 495
Target Start/End: Original strand, 7085 - 7159
Alignment:
Q  421 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||| || |||||||||||||  |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  7085 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 7159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 411 - 495
Target Start/End: Original strand, 49731 - 49815
Alignment:
Q  411 tgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    ||||||||| |||||| || |||||||||||||  ||||| |||||||||||| ||||||  |||||||||||||||||||||||    
T  49731 tgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgattggccaatgtcacc 49815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 469
Target Start/End: Complemental strand, 2350 - 2265
Alignment:
Q  384 atagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattg 469  Q
    |||||||||  |||| ||||| ||| | ||||||||||||||| || |||||||||||||  |||||||||||||||||| |||||    
T  2350 atagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 469
Target Start/End: Complemental strand, 2350 - 2265
Alignment:
Q  384 atagcacttaagtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattg 469  Q
    |||||||||  |||| ||||| ||| | ||||||||||||||| || |||||||||||||  |||||||||||||||||| |||||    
T  2350 atagcacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 2899 - 2975
Alignment:
Q  395 gtgatatagagttgagtgacattgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgtt 471  Q
    |||| ||||||||| |||| ||||| |||||| || ||||||||| |||  ||||||||||||||||||||||||||    
T  2899 gtgacatagagttgggtgatattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtt 2975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 495
Target Start/End: Original strand, 27258 - 27332
Alignment:
Q  421 caatcataacgtcacaatgcttgcaaaagagagagaaacacaaacattgttacattgtgattggccaatgtcacc 495  Q
    |||||| || |||| ||| ||||  ||||||||||||||| || ||||||  ||||||||||||||||| |||||    
T  27258 caatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgattggccaatatcacc 27332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 19154 - 19207
Alignment:
Q  415 attgatcaatcataacgtcacaatgcttgcaaaagagagagaaacacaaacatt 468  Q
    |||||||||||| || |||||||||||||   |||| |||||||||||||||||    
T  19154 attgatcaatcacaatgtcacaatgcttgtggaagaaagagaaacacaaacatt 19207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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