View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3605_low_13 (Length: 479)
Name: NF3605_low_13
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Complemental strand, 15354425 - 15353988
Alignment:
| Q |
17 |
aaatacctttaccaacgtatttagtgtcacattcatagtcttcagatgcacataacaagaggctaggaatatgttcattctggtgtttcttcaattccct |
116 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15354425 |
aaataccattaccaacatatttagtgtcacattcataatcttcagaagcacatagcaagaggttaggaatatgttcattctggtgtttcttcaattccct |
15354326 |
T |
|
| Q |
117 |
gaaaaaagagagttcttcttctgtgtcacattcaaatcgatttatgcgacctttcatattgtcctccaaaatcactttacccactaattctctatgctta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15354325 |
gaaaaaagagagttcttcttctgtgtcacattcaaatcgatttatgcgacctttcatattgtcctccaaaatcactttacccactaattctctatgctta |
15354226 |
T |
|
| Q |
217 |
ttatatatacaaacatatagttaaaaattaaattaatattaagnnnnnnntaaggtgatatataatttgttttgctctccaattccaccggatttataag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15354225 |
ttatatatacaaacatatagttaaaaattaaataaatattaagaaaaaaataaggtgatatataatttgttttgctctccaattccaccggatttataag |
15354126 |
T |
|
| Q |
317 |
tactctactttcattgattccatttcttgtgttcaaatgatgcatcatgtaacaaacgacaaaaaggaatttaattaattgtttatgtcacataatatga |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15354125 |
tactctactttcattgattccatttcttgtgttcaaatgatgcatgatgtaacaaacgacaaaaaggaatttaattaattgtttatgtcacataatatga |
15354026 |
T |
|
| Q |
417 |
attagtgccatgtggagttctagccggctatttctttt |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15354025 |
attagtgccatgtggagttctagccggctatttctttt |
15353988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University