View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_18 (Length: 436)
Name: NF3605_low_18
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 39662966 - 39663385
Alignment:
| Q |
1 |
tgaggaggagcagagaaccttaccaaaaccaaaccagaagaagaaaatgatgctacatatgaaggagaaattaggaaaatgaagtatagctagcaaaagt |
100 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39662966 |
tgagaaggagcagaaaaccttaccaaaaccaaaccagaagaagaaaatgatgctacatatgaaggagaaattaggaaaatgaagtatagctagcaaaagt |
39663065 |
T |
|
| Q |
101 |
ttgctggggggaatgaagcctggtccgagattgaaagttagtgatgagtgagtagagagtactcttccatctccatcacctcgagccagacaacgttcct |
200 |
Q |
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| T |
39663066 |
ttgctggggggaatgaagcctggtccgagattgaaagttagtgatgagtgagtagagagtactcttccatctccatcacctcgagccagacaacgttcct |
39663165 |
T |
|
| Q |
201 |
ctcaacctaactcttgcttctctttgatctttacaaatctaaataggtagatatatagagatgatttcatatataataaggatacactcacaagaagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39663166 |
ctcaacctaactcttgcttctctttgatctttacaaatctaaataggtagatatatagagatgatttcatatataataaggataaactcacaagaagaaa |
39663265 |
T |
|
| Q |
301 |
caattaagattttgaggggaatgaagcctggtccgaagccttatagttcatacaattaagactgaacttcctttgtgaaactgaaaagcctcgagccagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39663266 |
caattaagattttgaggggaatgaagcctggtccgaagccttatagttcatacaattaagactgaacttcctttgtgaaactgaaaagcctcgagccagc |
39663365 |
T |
|
| Q |
401 |
caacattcccctcaaataag |
420 |
Q |
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|||||||||||||||||||| |
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| T |
39663366 |
caacattcccctcaaataag |
39663385 |
T |
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