View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3605_low_19 (Length: 432)

Name: NF3605_low_19
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3605_low_19
NF3605_low_19
[»] chr8 (3 HSPs)
chr8 (11-432)||(2365934-2366354)
chr8 (28-159)||(2362040-2362171)
chr8 (36-158)||(2354058-2354180)


Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Complemental strand, 2366354 - 2365934
Alignment:
Q  11 caaaggagtagtgaacttatattagagcatgcagaaaatatacctgtcctcctggagataaattatcgacaatagcgccaaccaaaggcttctgcagacc 110  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2366354 caaaggagtagt-aacttatattagagcatgcagaaaatatacatgtccccctggagataaattatcgacaatagcaccaaccaaaggcttctgcagacc 2366256  T
Q  111 tcttcttttataatgttttttcttgaaatgagggtctggatactgcatgtttttcgatagacaaatttagtaatttagtggttacgttagttttcacggt 210  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  2366255 tcttcttttatgatgttttttcttgaaatgagggtctggatactgcatgtttttcgatagacaaatttagtaacttagtgattacgttagttttcacggt 2366156  T
Q  211 ttgaaccctaaacctcctttaaaatcatttggtatcccttagctcaacaaccgggctaactacgtgagacaaatcttgacattgcatgtcttaggtgaaa 310  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2366155 ttgaaccctaaacctcctttaaaatcatttggtatcctttagctcaacaaccgagctaactacgtgagacaaatcttgacattgcatgtgttaggtgaaa 2366056  T
Q  311 tcatttaacaataaataaaagacatttaaatgtaaaagctctaagtaacaataatatagccaacaagccattagctcagtggcacccaatcttgcttttg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2366055 tcatttaacaataaataaaagacatttaaatgtaaaagctctaagtaacaataatatagccaacaagccattagctcagtggcacccaatcttgcttttg 2365956  T
Q  411 agtgcttctagaaagactaacc 432  Q
    ||||||| ||||||||||||||    
T  2365955 agtgcttttagaaagactaacc 2365934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 2362171 - 2362040
Alignment:
Q  28 tatattagagcatgcagaaaatatacctgtcctcctggagataaattatcgacaatagcgccaaccaaaggcttctgcagacctcttcttttataatgtt 127  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |||| | |||||||||||| || ||    
T  2362171 tatattagagcatgcagaaaatatacctgtccccctggagataaattatctacaatagtgccaaccaaaggcttttgcaaaactcttcttttatgatatt 2362072  T
Q  128 ttttcttgaaatgagggtctggatactgcatg 159  Q
    ||||||| ||||||||||||||| ||||||||    
T  2362071 ttttctttaaatgagggtctggacactgcatg 2362040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 2354180 - 2354058
Alignment:
Q  36 agcatgcagaaaatatacctgtcctcctggagataaattatcgacaatagcgccaaccaaaggcttctgcagacctcttcttttataatgttttttcttg 135  Q
    ||||| |||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||| | | ||||| |||| |||||||||||||    
T  2354180 agcatacagaaaatatacctgtcccccaggagataaattatctacaatagcaccaaccaaaggcttctgcaaaacccttctcttatgatgttttttcttg 2354081  T
Q  136 aaatgagggtctggatactgcat 158  Q
    ||||||||||||||| |||||||    
T  2354080 aaatgagggtctggacactgcat 2354058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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