View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_20 (Length: 411)
Name: NF3605_low_20
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 42205484 - 42205874
Alignment:
| Q |
18 |
acattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcctatcacatgattaacatatcatatctatcaaagtgtcga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205484 |
acattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcctatcacatgattaacatatcatatctatcaaagtgtcga |
42205583 |
T |
|
| Q |
118 |
tggagacatggtcagtgt------gtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatg |
211 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205584 |
tggagacatggtcagtgtgtgtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatg |
42205683 |
T |
|
| Q |
212 |
aataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205684 |
aataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcgg |
42205783 |
T |
|
| Q |
312 |
tgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205784 |
tgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct |
42205874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 42214352 - 42214742
Alignment:
| Q |
18 |
acattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcctatcacatgattaacatatcatatctatcaaagtgtcga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214352 |
acattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcctatcacatgattaacatatcatatctatcaaagtgtcga |
42214451 |
T |
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| Q |
118 |
tggagacatggtcagtgt------gtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatg |
211 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214452 |
tggagacatggtcagtgtgtgtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatggttcaaagtatatctccaaacaaatctgccagaatg |
42214551 |
T |
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| Q |
212 |
aataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214552 |
aataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatcacaaggatttcattaccggacatgaaaacttctcgg |
42214651 |
T |
|
| Q |
312 |
tgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214652 |
tgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttcagagaaagcgacgtaccttttcttct |
42214742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 31720948 - 31720906
Alignment:
| Q |
66 |
atctctcttttcctatcacatgattaacatatcatatctatca |
108 |
Q |
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|||||||||| |||||||||| |||||||||||| |||||||| |
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| T |
31720948 |
atctctctttacctatcacatcattaacatatcacatctatca |
31720906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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