View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_23 (Length: 395)
Name: NF3605_low_23
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 20174422 - 20174793
Alignment:
| Q |
16 |
aaggttgtggttaactgcagtggcagaggggataaggatgttcaaactgctatgaaatacttgaaaatttgaacgtacatgattcagtctccaacatagt |
115 |
Q |
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| T |
20174422 |
aaggttgtggttaactgcagtggcagaggggataaggatgttcaaactgctatgaaatacttgaaaatttgaaagtacatgattcagtctccaacatagt |
20174521 |
T |
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| Q |
116 |
tgaattgttcagctcttgattgacctattttcttttcttattgagattgatgtgaagttgactgagtttgaggaggatcacttgtgaaagaa-------- |
207 |
Q |
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| T |
20174522 |
tgaacagttcagctcttgattgacctattttcttttcttattgagattgatgtgaagttgacttagtttgaggaggatcacttgtgaaagaattcttctg |
20174621 |
T |
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| Q |
208 |
-------tttagtttttggaaaccaatatatgcctaggaattttctaaatgttgtaacaattattacaaggcatcaaaggatactctcattgtttgattt |
300 |
Q |
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| T |
20174622 |
ggaagagtttagtttttggaaaccaatatatgcctaggaattttctaaatgttgttacaattattacagggcatcaaaggatactgtcattgtttgattt |
20174721 |
T |
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| Q |
301 |
gaagaataaaatagcatggagtcatgtaaaattatgtatcatatataaataagagatattcgttttgcctgaatgaag |
378 |
Q |
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| T |
20174722 |
gaagaataaaatagc------tcatgtaaaattatgtatcatatataaataagagatattcgttttgacagaatgaag |
20174793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 18402687 - 18402637
Alignment:
| Q |
14 |
caaaggttgtggttaactgcagtggcagaggggataaggatgttcaaactg |
64 |
Q |
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| T |
18402687 |
caaaggtcgtggttaacttcagtggccgaggtgataaggatgttcaaactg |
18402637 |
T |
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