View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_25 (Length: 392)
Name: NF3605_low_25
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 39274176 - 39274009
Alignment:
| Q |
18 |
tgtagttgatgattatgtgatgtgtttttggaatacgatgtgatgtttgataactctatttctattttttt-ctttctttnnnnnnnnctctatttctat |
116 |
Q |
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| T |
39274176 |
tgtagttgatgattatgtgatgtgtttttggaatacgatgtgatgtttgataactctatttctattttttttctttctttaaaaaaaactctatttctat |
39274077 |
T |
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| Q |
117 |
tttttgcgttaaaaatttgattaattgtataaaattcgtagaaatattaagatgaatcgactagttga |
184 |
Q |
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| T |
39274076 |
tttttacgttaaaaatttgattaattgtatagaattcgtagaaatattaagatgaatcgactagttga |
39274009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 219 - 361
Target Start/End: Complemental strand, 39273994 - 39273852
Alignment:
| Q |
219 |
cctaaatttatcaataagctaattatggtcggtagtcccttatttggagtgttaatcaaatagttaggttaaacattcattagtagatattgaaaatcaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39273994 |
cctaaatttatcaataagctaattatggtcggtagtcccttatttggagtgttaatcaaatagttaggttaaacatttattagtagatattgaaaatcaa |
39273895 |
T |
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| Q |
319 |
ttaatcgaggatnnnnnnngagaattgcttaattggttactat |
361 |
Q |
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| T |
39273894 |
ttaatcgaggataaaaaaagagaattgcttaattggttactat |
39273852 |
T |
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