View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_3 (Length: 780)
Name: NF3605_low_3
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 514 - 765
Target Start/End: Original strand, 43170216 - 43170467
Alignment:
| Q |
514 |
ttatgttaaagttggtcagtcatcttgagttacctgtaagaaaagtgagctacttatcggattttgtgcaaccacctcattgtcgaccatgatgcaaaag |
613 |
Q |
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| T |
43170216 |
ttatgttaaagttggtcagtcatcttgagttacctgtaagaaaagtgagctgcttatcggattttgcgcaaccaccttaatgtcgaccatgatgcaaaag |
43170315 |
T |
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| Q |
614 |
ggaaataaaatacattgatactgctagaagttgaaatgcagcgttgcaaatgacacatttatagtgttgtgcagagtttgttatgaacaggttggattcc |
713 |
Q |
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| T |
43170316 |
ggaaataaaatacattgatgctgctagaagttgaaatgcagcgttacaaatgacacatttatagtgttgtgcagagtttgttatgaacaggttggattcc |
43170415 |
T |
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| Q |
714 |
atgctctcttgccatggatttctttccaacttttttcaactgccttccacag |
765 |
Q |
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| T |
43170416 |
atgctctcttgccatggatttctttccaacttttttcaactgccttccacag |
43170467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 294 - 479
Target Start/End: Original strand, 43170023 - 43170209
Alignment:
| Q |
294 |
aatagagtgtaaaa-atttaatcaaatagcaaatcagtgacactgtcaaacttgcagctcgctagtaacttacttcaaattatgtaactagtctattttc |
392 |
Q |
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| T |
43170023 |
aatagagtgtaaaaaatttaatcaaatagcaaatcagtgacactgtcaaacttgcagctcgctagtaacttacttcaaattatgtaactaatctattttc |
43170122 |
T |
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| Q |
393 |
taatttatacaaggcagcatattagaaaatcaaaatacttataaccacatgttcaaccagaaatcttataccggtactggtgggaat |
479 |
Q |
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| T |
43170123 |
taatttatacaagacagcatattagaaaataaaaatacttataaccacatgttcaaccagaaatcttataccggtactggtgggaat |
43170209 |
T |
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