View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3605_low_30 (Length: 370)

Name: NF3605_low_30
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3605_low_30
NF3605_low_30
[»] scaffold0147 (1 HSPs)
scaffold0147 (12-352)||(19579-19918)


Alignment Details
Target: scaffold0147 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 19579 - 19918
Alignment:
Q  12 cacagaccaatattaatatttcaatgttgaacaagtaaaagccccaatactgaaggctcatcattatatatcctcctggcaaaaaagagtaaatgtagaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  19579 cacagaccaatattaatatttcaatgttgaacaagtaaaagcaccaatactgaaggttcatcattatatatcctcctggcaaaa-agagtaaatgtagaa 19677  T
Q  112 accatgatcaaacggaaatatcaagtgtctataaaatcttgagcacaatcttcttgttctaaatgaagacgcgcgcaaattcaactatttatgactattg 211  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19678 accatgatcaaatggaaatatcaagcgtctataaaatcttgagcacaatcttcttgttctaaatgaagacgcgcgcaaattcaactatttatgactattg 19777  T
Q  212 acaaagtcaagcatgcatagttgtatcacaaatatccccagttaaaatgaagagaaggcattaagtcattttcaatattaaggttcagcgtgcttgtacc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19778 acaaagtcaagcatgcatagttgtatcacaaatatccccagttaaaatgaagagaaggcattaagtcattttcaatattaaggttcagcgtgcttgtacc 19877  T
Q  312 aaaagaacaataatagatccgtagatccttagcccagttta 352  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19878 aaaagaacaataatagatccgtagatccttagcccagttta 19918  T

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