View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_32 (Length: 364)
Name: NF3605_low_32
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_32 |
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| [»] scaffold0915 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 126 - 353
Target Start/End: Original strand, 2150982 - 2151209
Alignment:
| Q |
126 |
acccttcaagacaattaaattgattcattgaaaatacataaagttaacttaaatgatgggtattttggagatgctatcagtaaaaaggagaaaagtagta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2150982 |
acccttcaagacaattaaattgattcattgaaaatacataaagttaacttaaatgatgggtattttggagatgctatccgtaaaaaggagaaaagtagta |
2151081 |
T |
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| Q |
226 |
cagtttgattatatttcattccacaaaataggaaataaatgttgctataattcattccagaaagagtagaatggtaatggatcatcaatgtgatttttgg |
325 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151082 |
cagtttgattatatttcattccacaaaataggaagtaaatgttgctataattcattctagaaagagtagaatggtaatggatcatcaatgtgatttttgg |
2151181 |
T |
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| Q |
326 |
taaaatnnnnnnncagagatgaaattag |
353 |
Q |
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|||||| ||||||||||||||| |
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| T |
2151182 |
taaaataaaaaaacagagatgaaattag |
2151209 |
T |
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Target: scaffold0915 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0915
Description:
Target: scaffold0915; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 2724 - 2791
Alignment:
| Q |
48 |
gtgaaacataagcaaaattagaccaaattatgcatattaaataaagtagttgatcacatttaatcaat |
115 |
Q |
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| T |
2724 |
gtgaaatataagtgaaatttgaccaaattatgcatattaagaaaagtagctgatcacatttaatcaat |
2791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 28973614 - 28973681
Alignment:
| Q |
48 |
gtgaaacataagcaaaattagaccaaattatgcatattaaataaagtagttgatcacatttaatcaat |
115 |
Q |
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| T |
28973614 |
gtgaaatataagtgaaatttgaccaaattatgcatattaagaaaagtagctgatcacatttaatcaat |
28973681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 28986995 - 28987081
Alignment:
| Q |
114 |
attgactatattacccttcaagacaattaaattgattcattgaaaatacataaagttaacttaaatgatgggtattttggagatgcta |
201 |
Q |
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|||| ||| ||||||||||| ||| | ||| ||||||||||||||||||| ||| |||| |||||||| ||||||||| ||||||||| |
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| T |
28986995 |
attgcctaaattacccttcatgactaataatttgattcattgaaaataca-aaaattaaattaaatgaggggtattttagagatgcta |
28987081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 28996933 - 28997000
Alignment:
| Q |
48 |
gtgaaacataagcaaaattagaccaaattatgcatattaaataaagtagttgatcacatttaatcaat |
115 |
Q |
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| T |
28996933 |
gtgaaatataagtgaaatttgaccaaattatgcatattaagaaaagtagtcgatcacatttaatcaat |
28997000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 28986901 - 28986968
Alignment:
| Q |
48 |
gtgaaacataagcaaaattagaccaaattatgcatattaaataaagtagttgatcacatttaatcaat |
115 |
Q |
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| T |
28986901 |
gtgaaatataagtgaaatttgaccaaaagatgcatattaagaaaagtagttgatcacatttaatcaat |
28986968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 17140424 - 17140354
Alignment:
| Q |
149 |
ttcattgaaaatacataaagttaacttaaatgatgggtattttggagatgctatcagtaaaaaggagaaaa |
219 |
Q |
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| T |
17140424 |
ttcattgaaaataccaaaagttaaattaaatgaggggtattttagagatactataattaaataggataaaa |
17140354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 12522076 - 12522019
Alignment:
| Q |
214 |
agaaaagtagtacagtttgattatatttcattccacaaaataggaaataaatgttgct |
271 |
Q |
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|||||||||||||| |||| ||||||||||||| | |||||| ||| ||||| ||||| |
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| T |
12522076 |
agaaaagtagtacaatttgcttatatttcattctaaaaaatatgaactaaattttgct |
12522019 |
T |
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