View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_35 (Length: 356)
Name: NF3605_low_35
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 10682229 - 10682558
Alignment:
| Q |
20 |
accttatctcccataagaagtccaacagcgcagccatttgcaggagatggcttccatgtagttgacagagtctggcagaataaaaatatagtagcgaatt |
119 |
Q |
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| T |
10682229 |
accttatctcccataagaagtccaacagcgcagccatttgcaggagatggcttccatgtagttgatagagtctggcagaataaaaatatagtagcgaatt |
10682328 |
T |
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| Q |
120 |
cataagt-acgtacagtctacggtgtataatactcctctgagacaactttataaacaaatacaaaacattttgcattcaacattaaatcatataattcaa |
218 |
Q |
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| T |
10682329 |
cataagttacgtacagtctacggtgtataatactcccctgagacaactttataaacaaatacaaaacattttgcattcaacattaaatcatataattcaa |
10682428 |
T |
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| Q |
219 |
gaaacaatatgctttttcagagcatagcagcagagtttctaatcaaacacacaatacacatcaaattctgcaattgaaccgcaacaaaaagaatatatag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10682429 |
gaaacaatatgctttttcagagcatagcagcagagtttctaatcaaacacacaatacacatcaaattctgcaattgaaccgcaacaaaaagaatatatag |
10682528 |
T |
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| Q |
319 |
gtacagaaaacatcatcttaaacctatgct |
348 |
Q |
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| T |
10682529 |
gtacagaaaacatcatcttaaacctatgct |
10682558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 7514184 - 7514110
Alignment:
| Q |
20 |
accttatctcccataagaagtccaacagcgcagccatttgcaggagatggcttccatgtagttgacagagtctgg |
94 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
7514184 |
accttatctcccataagaagcccaacagcacagccatttgcaggaggcggcttccacgtagttgacagagtctgg |
7514110 |
T |
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