View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3605_low_40 (Length: 336)

Name: NF3605_low_40
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3605_low_40
NF3605_low_40
[»] chr8 (25 HSPs)
chr8 (24-334)||(38453377-38453690)
chr8 (144-334)||(39848784-39848971)
chr8 (223-334)||(38633072-38633183)
chr8 (252-334)||(34549178-34549260)
chr8 (234-331)||(34539003-34539100)
chr8 (249-334)||(39848646-39848731)
chr8 (24-80)||(39849056-39849112)
chr8 (257-334)||(34533725-34533802)
chr8 (257-334)||(34533863-34533940)
chr8 (258-334)||(38453890-38453966)
chr8 (257-332)||(34916426-34916501)
chr8 (264-334)||(39848268-39848338)
chr8 (257-334)||(34544775-34544852)
chr8 (257-334)||(38632555-38632632)
chr8 (257-334)||(38632794-38632871)
chr8 (258-336)||(38632933-38633011)
chr8 (264-336)||(34916157-34916229)
chr8 (264-327)||(34916571-34916634)
chr8 (24-79)||(38633348-38633403)
chr8 (257-335)||(34533587-34533665)
chr8 (272-336)||(36951473-36951537)
chr8 (265-333)||(39848368-39848436)
chr8 (257-321)||(39848518-39848582)
chr8 (28-63)||(36951896-36951931)
chr8 (264-329)||(34534008-34534073)
[»] chr4 (1 HSPs)
chr4 (228-334)||(44474650-44474756)
[»] chr3 (2 HSPs)
chr3 (186-314)||(7045751-7045879)
chr3 (24-75)||(7045575-7045626)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 334
Target Start/End: Original strand, 38453377 - 38453690
Alignment:
Q  24 attttctccacaattagaactccttccatatattcccttttgataaccaaagggctctca---ggtgaggaatcaggacatatccaatatccatcaggat 120  Q
    |||||||||||||| ||||||| || |||||||||| ||| ||||||  || |  || ||   | |||||||||||||||||| |||| |||||| ||||    
T  38453377 attttctccacaatcagaactctttgcatatattccatttcgataacagaaagaatcacaccagatgaggaatcaggacatatacaatctccatcgggat 38453476  T
Q  121 tttgaacggcccatattgccaatcctttctctgtcacttttccattaactcgatcaccctcctcatacattgttccatttgagcatgtgtgcatattgtt 220  Q
    |||||| | | |||||   || || ||||||| |||||||||||||    |     |   |||| |||||||||||||||||  ||||||   |   |||    
T  38453477 tttgaaggcctcatatcatcagtcttttctctatcacttttccatttgagcatatgcaaccctcgtacattgttccatttgaaaatgtgtattttccgtt 38453576  T
Q  221 gccatggagaactttactcttgaagttaccgatgtcgacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaacca 320  Q
    |||||| ||   ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||    
T  38453577 gccatgaagttgtttactcctgaagttaccaatgtcgacatccccatttgcaaatctaaaaactccagatccatgtataagtccatttgaccaacaacca 38453676  T
Q  321 tcaaaaacatcacc 334  Q
    ||||||||||||||    
T  38453677 tcaaaaacatcacc 38453690  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 144 - 334
Target Start/End: Complemental strand, 39848971 - 39848784
Alignment:
Q  144 cctttctctgtcacttttccattaactcgatcaccctcctcatacattgttccatttgagcatgtgtgcatattg--ttgccatggagaactttactctt 241  Q
    ||||||||||||||||||  || ||| | ||||||||| |   | |||||||||||||||  |||||| || ||   ||| ||||||||| ||||||| |    
T  39848971 cctttctctgtcacttttttatcaacccaatcaccctcgt---atattgttccatttgag--tgtgtgtattttccattgtcatggagaagtttactcct 39848877  T
Q  242 gaagttaccgatgtcgacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcacc 334  Q
    ||||||||| || ||||||| ||| || ||| ||||| |||||||||||||||||||||| || ||||||||||||||||| || ||||||||    
T  39848876 gaagttaccaatatcgacatccccgttagcatatctataaactccatatccatgtataagtccatttgaccaacaaccatcgaagacatcacc 39848784  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 38633183 - 38633072
Alignment:
Q  223 catggagaactttactcttgaagttaccgatgtcgacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatc 322  Q
    ||||||||| ||||||| |||||||||| || ||||||| |||||| ||| ||||| |||||||| ||||||||||||| || |||||||||||||||||    
T  38633183 catggagaagtttactcctgaagttaccaatatcgacatccccattagcatatctataaactccagatccatgtataagcccatttgaccaacaaccatc 38633084  T
Q  323 aaaaacatcacc 334  Q
     || ||||||||    
T  38633083 gaagacatcacc 38633072  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 34549178 - 34549260
Alignment:
Q  252 atgtcgacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcacc 334  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||| |||| || || ||||||||||||||||||||||||||    
T  34549178 atgtagacattcccatttgaaaatctataaactccatatccatgtgtaagtccattagaccaacaaccatcaaaaacatcacc 34549260  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 34539003 - 34539100
Alignment:
Q  234 ttactcttgaagttaccgatgtcgacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatc 331  Q
    |||||||||||||| |||| ||  |||| |||||||||||||||| |||||||| | |||||| |||| || |||||||||||||||| |||||||||    
T  34539003 ttactcttgaagtttccgaagtacacatccccatttgcaaatctataaactccagaaccatgtctaagtccatttgaccaacaaccattaaaaacatc 34539100  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 249 - 334
Target Start/End: Complemental strand, 39848731 - 39848646
Alignment:
Q  249 ccgatgtcgacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcacc 334  Q
    ||||||| ||||| |||||||||||||||| |||||||| |||||||| |||| || ||||||  |||||||||||||||||||||    
T  39848731 ccgatgtagacatccccatttgcaaatctataaactccaaatccatgtctaagtccatttgacatacaaccatcaaaaacatcacc 39848646  T

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Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 39849112 - 39849056
Alignment:
Q  24 attttctccacaattagaactccttccatatattcccttttgataaccaaagggctc 80  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  39849112 attttctccacaattaaaactccttgcatatattcccttttgataaccaaagggctc 39849056  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 34533725 - 34533802
Alignment:
Q  257 gacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcacc 334  Q
    ||||| |||||||| ||||||| ||||||||||||||||| |||| || ||||||||||||||||| |||||| ||||    
T  34533725 gacatccccatttgtaaatctacaaactccatatccatgtctaagtccatttgaccaacaaccatcgaaaacaacacc 34533802  T

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Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 34533863 - 34533940
Alignment:
Q  257 gacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcacc 334  Q
    ||||| |||||||||| ||||| ||||||||||||||| | |||| |  |||||||||||||||||||||||||||||    
T  34533863 gacatccccatttgcatatctataaactccatatccatctttaagtctatttgaccaacaaccatcaaaaacatcacc 34533940  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 38453890 - 38453966
Alignment:
Q  258 acattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcacc 334  Q
    |||| ||||||| || ||||| |||||||||||||||||| ||| |  |||||||||||||||||||||||||||||    
T  38453890 acatccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaaccatcaaaaacatcacc 38453966  T

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Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 34916426 - 34916501
Alignment:
Q  257 gacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatca 332  Q
    ||||| |||||||||||||||| ||||||||||||||||| || | || ||||||||| ||||||| |||||||||    
T  34916426 gacatccccatttgcaaatctataaactccatatccatgtttatgtccatttgaccaataaccatcgaaaacatca 34916501  T

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Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 39848338 - 39848268
Alignment:
Q  264 ccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcacc 334  Q
    ||||||||||||||||||||||||||||||| || ||   | |||||||||||||||| ||||||||||||    
T  39848338 ccatttgcaaatctaaaaactccatatccatatacaaagtcatttgaccaacaaccattaaaaacatcacc 39848268  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 34544775 - 34544852
Alignment:
Q  257 gacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcacc 334  Q
    |||||||||||||| ||||||| ||||||||||||||||| || | || ||||||||||| ||||  |||||||||||    
T  34544775 gacattcccatttgaaaatctataaactccatatccatgtctatgtccatttgaccaacatccattgaaaacatcacc 34544852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 334
Target Start/End: Complemental strand, 38632632 - 38632555
Alignment:
Q  257 gacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcacc 334  Q
    ||||| ||||||||||  ||||||||||||| ||||||||| ||| || |||||||||||| |||| |||||||||||    
T  38632632 gacatccccatttgcagctctaaaaactccaaatccatgtagaagtccatttgaccaacaagcatccaaaacatcacc 38632555  T

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Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 334
Target Start/End: Complemental strand, 38632871 - 38632794
Alignment:
Q  257 gacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcacc 334  Q
    ||||| |||||||||| ||||| |||||||| ||||||||||||| || | ||||||||||||||| || ||||||||    
T  38632871 gacatccccatttgcagatctataaactccaaatccatgtataagtccatctgaccaacaaccatcgaagacatcacc 38632794  T

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Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 38633011 - 38632933
Alignment:
Q  258 acattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcaccgt 336  Q
    |||| ||||||||||||| || |||||||| |||||| | |||| || |||||| || |||||||||||||||||||||    
T  38633011 acatccccatttgcaaatttataaactccaaatccatatctaagtccatttgacaaataaccatcaaaaacatcaccgt 38632933  T

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Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 34916157 - 34916229
Alignment:
Q  264 ccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcaccgt 336  Q
    ||||||||||||||| |||||||||| |||||| |  | || ||||||||| ||||||| |||||||||||||    
T  34916157 ccatttgcaaatctataaactccatagccatgtttctgtccatttgaccaataaccatcgaaaacatcaccgt 34916229  T

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Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 34916571 - 34916634
Alignment:
Q  264 ccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaa 327  Q
    ||||||||| ||||| |||||||||||||||||  ||| || ||||||||||||||||| ||||    
T  34916571 ccatttgcagatctataaactccatatccatgtgaaagtccatttgaccaacaaccatcgaaaa 34916634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 38633403 - 38633348
Alignment:
Q  24 attttctccacaattagaactccttccatatattcccttttgataaccaaagggct 79  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||| || ||||||    
T  38633403 attttctccacaattagaactccttgcatacattccctttcgataagcagagggct 38633348  T

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Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 34533587 - 34533665
Alignment:
Q  257 gacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcaccg 335  Q
    ||||| |||||| ||| || || |||||||| |||||||| |||| || ||| ||||||||||||| ||||||||||||    
T  34533587 gacatccccattagcatatgtataaactccagatccatgtttaagtccattttaccaacaaccatcgaaaacatcaccg 34533665  T

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Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 36951537 - 36951473
Alignment:
Q  272 aaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcaccgt 336  Q
    ||||||| |||||||| |||| ||| |||| || ||| |||||||||||||||||||||| ||||    
T  36951537 aaatctataaactccagatccttgtctaagtccatttaaccaacaaccatcaaaaacatcgccgt 36951473  T

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Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 39848436 - 39848368
Alignment:
Q  265 catttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaacatcac 333  Q
    |||||||| ||||| |||||||| |||||||||||||  |  |||| | ||||||||||||||||||||    
T  39848436 catttgcatatctataaactccaaatccatgtataagcgcaattgatcgacaaccatcaaaaacatcac 39848368  T

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Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 39848582 - 39848518
Alignment:
Q  257 gacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccat 321  Q
    ||||| |||||||||  ||||| |||||||||||||||||  ||| || ||||||||||||||||    
T  39848582 gacatccccatttgcggatctataaactccatatccatgtgcaagtccatttgaccaacaaccat 39848518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 36951931 - 36951896
Alignment:
Q  28 tctccacaattagaactccttccatatattcccttt 63  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36951931 tctccacaattagaactccttgcatatattcccttt 36951896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 34534008 - 34534073
Alignment:
Q  264 ccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaaca 329  Q
    |||||| || ||||| |||| |||| ||||||| |||| || ||||||||||||||||| ||||||    
T  34534008 ccatttacatatctataaaccccatgtccatgtttaagtccatttgaccaacaaccatcgaaaaca 34534073  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 334
Target Start/End: Complemental strand, 44474756 - 44474650
Alignment:
Q  228 agaactttactcttgaagttaccgatgtcgacattcccatttgcaaatctaaaaactccatatccatgtataagaccttttgaccaacaaccatcaaaaa 327  Q
    |||| ||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||| || |||||||| ||||| |||||||    
T  44474756 agaagtttactcctgaagttaccaatgtcgacatccccatttgcaaatttaaaaactccagatccatgtataagtccatttgaccagcaaccttcaaaaa 44474657  T
Q  328 catcacc 334  Q
    |||||||    
T  44474656 catcacc 44474650  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 314
Target Start/End: Original strand, 7045751 - 7045879
Alignment:
Q  186 tacattgttccatttgagcatgtgtgcatattgttgccatggagaactttactcttgaagttaccgatgtcgacattcccatttgcaaatctaaaaactc 285  Q
    ||||||||||||||||| ||||||  | |   |||| ||| ||||| || |||||| |||||||| |||| |||||  |||||||||||| |||||||||    
T  7045751 tacattgttccatttgaccatgtgcactttccgttgtcatagagaagttgactcttaaagttaccaatgttgacatctccatttgcaaatgtaaaaactc 7045850  T
Q  286 catatccatgtataagaccttttgaccaa 314  Q
    |||||||||||||||| || |||||||||    
T  7045851 catatccatgtataagtccatttgaccaa 7045879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 7045575 - 7045626
Alignment:
Q  24 attttctccacaattagaactccttccatatattcccttttgataaccaaag 75  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||| |||||    
T  7045575 attttctccacaattagaactccttgcatatattttcttttgataatcaaag 7045626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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