View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_41 (Length: 327)
Name: NF3605_low_41
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 5675512 - 5675214
Alignment:
| Q |
19 |
gaaaccatggtgaatgttattcccggctttgacttaattacaggttattgggatgatctcattgtacctaaccaatgaagcaaatttttcggtctagggc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5675512 |
gaaaccatggtgaatgttattcccggctttgacttaattacaggttattgggatgatctcattgtacctaaccaatgaagcaaatttttcggtctagggc |
5675413 |
T |
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| Q |
119 |
ttcattactaactttattggaaccatactaccaatgatgttggtggcgggatagataagattttaaagtttctaatcatttggactagtcttgattataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5675412 |
ttcattactaactttattggaaccatactaccaatgatgttggtggcgggatagataagattttaaagtttctaatcatttggactagtcttgattataa |
5675313 |
T |
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| Q |
219 |
atggacatagaattattgtttccaaaagaggcttttttataatattctaagtgcactattgttctgctggtgctgaagcatttgcacttgcatcctttg |
317 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5675312 |
atggacatagaattattgtttccaaaagaggcgtttttataatattctaagtgcactattgttctgctggtgctgaagcatttgcacttgcatcctttg |
5675214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 5663861 - 5663563
Alignment:
| Q |
19 |
gaaaccatggtgaatgttattcccggctttgacttaattacaggttattgggatgatctcattgtacctaaccaatgaagcaaatttttcggtctagggc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663861 |
gaaaccatggtgaatgttattcccggctttgacttaattacagtttattgggatgatctcattgtacctaaccaatgaagcaaatttttcggtctagggc |
5663762 |
T |
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| Q |
119 |
ttcattactaactttattggaaccatactaccaatgatgttggtggcgggatagataagattttaaagtttctaatcatttggactagtcttgattataa |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663761 |
ttcattactaactttattgaaaccatactaccaatgatgttggtggctggatagataagattttaaagtttctaatcatttggactagtcttgattataa |
5663662 |
T |
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| Q |
219 |
atggacatagaattattgtttccaaaagaggcttttttataatattctaagtgcactattgttctgctggtgctgaagcatttgcacttgcatcctttg |
317 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5663661 |
atggacatagaattattgtttccaaaagaggcatgtttataatattctaagtgcactattattctgctggtgctgaagcatttgcacttgcatcctttg |
5663563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 5685011 - 5684713
Alignment:
| Q |
19 |
gaaaccatggtgaatgttattcccggctttgacttaattacaggttattgggatgatctcattgtacctaaccaatgaagcaaatttttcggtctagggc |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5685011 |
gaaaccatggtgaatgttattccctgctttgacttaataacaggttattgggatgatctcattgtacctaaccaatgaagcaaatttttcggtctagggc |
5684912 |
T |
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| Q |
119 |
ttcattactaactttattggaaccatactaccaatgatgttggtggcgggatagataagattttaaagtttctaatcatttggactagtcttgattataa |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5684911 |
ttcattacaaactttattggaaccatactaccaatgatgtcggtggcgggatagataagattttagagtttctaatcatttggactagtcttgattataa |
5684812 |
T |
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| Q |
219 |
atggacatagaattattgtttccaaaagaggcttttttataatattctaagtgcactattgttctgctggtgctgaagcatttgcacttgcatcctttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5684811 |
atggacatagaattattgtttccaaaagaggcttttttataatattctaagtgcactattgttctggtggtgctgaagcatttgcacttgcatcctttg |
5684713 |
T |
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