View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_44 (Length: 315)
Name: NF3605_low_44
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 82 - 294
Target Start/End: Original strand, 40359870 - 40360082
Alignment:
| Q |
82 |
gattcataaggaattgaatcgattaaacaagccaaaaatggctaaaaagtaatagnnnnnnnnnn--gagggagaaaaatgaaattattacaagctgctt |
179 |
Q |
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| T |
40359870 |
gattcataaggaattgaatcgattaaacaagccaaaaatggctaaaaagtaatagaaaaaaaaaaaagagggagaaaaatgaaattattacaagctgctt |
40359969 |
T |
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| Q |
180 |
cattcttctaatacctagtacgtagcaagtaataatatcatatagtatatgatcaatttgctgcttttgcagcaacaagacggcttctgtgttcacctgt |
279 |
Q |
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| T |
40359970 |
cattcttctaatacctagtacgtagcaagtaataatatcatatag--tatgatcaatttgctgcttttgcagcaacaagacggcttctgtgttcacctgt |
40360067 |
T |
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| Q |
280 |
acaggaagatattgg |
294 |
Q |
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||||||||||||||| |
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| T |
40360068 |
acaggaagatattgg |
40360082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40359812 - 40359876
Alignment:
| Q |
1 |
gtactaggcatttcacataatgaacaaagacaaccatgtgttgtggtctaattcttctgattcat |
65 |
Q |
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| T |
40359812 |
gtactaggcatttcacataatgaacaaagacaaccatgtgttgtggtctgattcttctgattcat |
40359876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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