View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_46 (Length: 305)
Name: NF3605_low_46
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 35 - 290
Target Start/End: Original strand, 2656362 - 2656617
Alignment:
| Q |
35 |
cactaggtacatgaacgaaagtaccatttcaaactggtctcaggttcacatatagttgcaagaacaaatccttgacatacctgcataataatgatcatca |
134 |
Q |
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| T |
2656362 |
cactgggtacatgaacgaaagtaccattccaaactggtctcaggttcacatatagttgcaagaacaaatccttgacatacctgcataataatgatcatca |
2656461 |
T |
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| Q |
135 |
attagtaatgattatttggtccacttgttcaactgtctattttaaattgaaacttattaacatataagagacataaataaaccacctcagatgattcaat |
234 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2656462 |
attagtaatgatcatttggtccacttgttcaactgtctattttaaattgaaacttattaacatataagagacataaataaaccacctcagatgattcaat |
2656561 |
T |
|
| Q |
235 |
caaattttcaatcgtcatcctttttgtctttagcaaatccttagacaacgacacag |
290 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||| |
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| T |
2656562 |
caaattttcaatcgtcatccttttcgtctttaggaaatcctcagacaatgacacag |
2656617 |
T |
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