View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_49 (Length: 289)
Name: NF3605_low_49
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 8680034 - 8680306
Alignment:
| Q |
1 |
gaacatagtaaggatagttttcatggttggtagatatagttttgaatatcttcctatgtattaggaatctcatgatacggttaagatatgaaggattgca |
100 |
Q |
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| T |
8680034 |
gaacatagtaaggatagttttcatggttggtagatatggttttgaatatcttcctgtgtattaggaatctcatgatgcggttaagatatgaaggattgca |
8680133 |
T |
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| Q |
101 |
ttctagagttgatgataactctaatagtgacatgggtttcccatgcttttcaatggcttcagctataccaagttcaattgcacatttcaccacagcttgg |
200 |
Q |
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| T |
8680134 |
tcctagagttgatgataactctaatagtgacattggtttcccatgcttttcaatggcttcagctataccaagttcaattgcacatttcaccacagcttgg |
8680233 |
T |
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| Q |
201 |
tcagcaaaaccaaatatgtatttccatatttccacttgagcttctgcttcttctttctcattctcatccttct |
273 |
Q |
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| T |
8680234 |
tcagcaaaaccaaatatgtatttccatatttccacttgagcttctgcttcttctttctcattctcatccttct |
8680306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 37742222 - 37742477
Alignment:
| Q |
1 |
gaacatagtaaggatagttttcatggttggtagatatagttttgaatatcttcctatgtattaggaatctcatgatacggttaagatatgaaggattgca |
100 |
Q |
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|||||||| |||||||| |||||||||||| || ||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||| || || |
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| T |
37742222 |
gaacatagctaggatagtcatcatggttggtattcatggttttaaatattttcctatgtactaggaatctcatgatacggttaacatatgaagaatcaca |
37742321 |
T |
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| Q |
101 |
ttctagagttgatgataactctaatagtgacatgggtttcccatgcttttcaatggcttcagctataccaagttcaattgcacatttcaccacagcttgg |
200 |
Q |
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| T |
37742322 |
ttttagagttgatgataactctagtagtgacatgggttttttgtgcttttcaatggcttcagctataccaagttcaattgcacatttcactacagctagc |
37742421 |
T |
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| Q |
201 |
tcagcaaaaccaaatatgtatttccatatttccacttgagcttctgcttcttcttt |
256 |
Q |
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||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
37742422 |
tcaacaaaaccaaatatgtacttccatatttctacttgagcttctgcttcttcttt |
37742477 |
T |
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