View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_50 (Length: 287)
Name: NF3605_low_50
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_50 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 19704 - 19974
Alignment:
| Q |
2 |
gtctataaaatcttgagcacaatcttcttgttctaaatgaagacgcgcgcaaattcaactatttatgactattgacaaagtcaagcatgcatagttgtat |
101 |
Q |
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| T |
19704 |
gtctataaaatcttgagcacaatcttcttgttctaaatgaagacgcgcgcaaattcaactatttatgactattgacaaagtcaagcatgcatagttgtat |
19803 |
T |
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| Q |
102 |
cacaaatatccccagttaaaatgaagagaaggcattaagtcattttcaatattaaggttcagcgtgcttgtaccaaaagaacaataatagatccgtagat |
201 |
Q |
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| T |
19804 |
cacaaatatccccagttaaaatgaagagaaggcattaagtcattttcaatattaaggttcagcgtgcttgtaccaaaagaacaataatagatccgtagat |
19903 |
T |
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| Q |
202 |
ccttagcccagtttaaaccaccttctagtgtatgaaagcttctcagtcaaaagaagttaatagttctttct |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19904 |
ccttagcccagtttaaaccaccttctagtgtatgaaagcttctcagtcaaaagaagctaatagttctttct |
19974 |
T |
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