View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_52 (Length: 283)
Name: NF3605_low_52
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_52 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 100 - 283
Target Start/End: Original strand, 4730354 - 4730538
Alignment:
| Q |
100 |
attgcctatcatcccttctgacaaaggttttccagccgttgtctattgtgtcgttgcctatagatatatagtctgcaaaaagttagattgtgatattaat |
199 |
Q |
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| T |
4730354 |
attgcctatcatcccttctgagaaaggttttccagccgttgtctattgtgtcgttgcctatagatatatagtctgcaaaaagttagattgcgatattaat |
4730453 |
T |
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| Q |
200 |
ttattatggtgtac-nnnnnnnnacatataatactattttagttggtttataatttgtataataatgaaaagaagagaataaata |
283 |
Q |
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| T |
4730454 |
ttatcatagtatactttttttttacatataatactattttagttggtttataatttgtataataatgaaaagaagagaataaata |
4730538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4730284 - 4730353
Alignment:
| Q |
1 |
ctaaactgtctcgttacaacccttgattcagatttgataattgaaatgaagagaacaaggttttccagcc |
70 |
Q |
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| T |
4730284 |
ctaaactgtctcgttacaacccttgattcagatttgataattgaaatgaagagaacaaggttttccagcc |
4730353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 4741034 - 4741111
Alignment:
| Q |
102 |
tgcctatcatcccttctgacaaaggttttccagccgttgtctattgtgtcgttgcctatagatatatagtctgcaaaa |
179 |
Q |
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| T |
4741034 |
tgcctattatcccttctgacaatggttttccagccgttgtctattctgtcgttgcctatagatatatagtcagcaaaa |
4741111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 4684687 - 4684740
Alignment:
| Q |
230 |
tactattttagttggtttataatttgtataataatgaaaagaagagaataaata |
283 |
Q |
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| T |
4684687 |
tactatttcatttggtttataatttgtataataatgaaaagtaaagaagaaata |
4684740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 4741163 - 4741223
Alignment:
| Q |
222 |
acatataatactattttagttggtttataatttgtataataatgaaaagaagagaataaata |
283 |
Q |
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| T |
4741163 |
acatatagtactatttcagttggtttataatttgta-aataatgaaaaaaagataacaaata |
4741223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 4754266 - 4754304
Alignment:
| Q |
14 |
ttacaacccttgattcagatttgataattgaaatgaaga |
52 |
Q |
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| T |
4754266 |
ttacaacccttgattcagattggataattaaaatgaaga |
4754304 |
T |
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