View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_53 (Length: 279)
Name: NF3605_low_53
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 28924835 - 28925084
Alignment:
| Q |
17 |
atattcaacatctaatagaaaaatggtttagaaaattagtttcattttaacttggaaaatactactttgattgcaaccaggattcagaattgggggatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28924835 |
atattcaacatctaatagaaaaatggtttagaaaattagtttcattttaacttggaaaatactactttgattgcaaccaggattcagaattgggggatat |
28924934 |
T |
|
| Q |
117 |
tgcatcagaaaatattgttggcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacattagaaagctgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28924935 |
tgcatcagaaaatattgttggcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacattagaaagccgga |
28925034 |
T |
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| Q |
217 |
gcagaatttcttggttgatgtcatcttgctttgatgatctgttgattcct |
266 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28925035 |
gcagaatttcttggctgatgtcatcttgctttgatgatctgttgattcct |
28925084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 28901211 - 28901456
Alignment:
| Q |
21 |
tcaacatctaatagaaaaatggtttagaaaattagtttcattttaacttggaaaatactactttgattgcaaccaggattcagaattgggggatattgca |
120 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
28901211 |
tcaacatctaatagaaaaatggtttagaaaatgagtttcattttaacttggaaaatactactttgattgcaaccaggtttcagaattgggggatagtgca |
28901310 |
T |
|
| Q |
121 |
tcagaaaatattgttggcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacattagaaagctggagcag |
220 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
28901311 |
gcagaaaatattgttagcaaattaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacataagaaagccggagcag |
28901410 |
T |
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| Q |
221 |
aatttcttggttgatgtcatcttgctttgatgatctgttgattcct |
266 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
28901411 |
aatttcttggttgatgtcagcttgctttgatgatcttttgattcct |
28901456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 28915651 - 28915877
Alignment:
| Q |
31 |
atagaaaaatggtttagaaaattagtttc-attttaacttggaaaatactactttgattgcaaccaggattcagaattgggggatattgcatcagaaaat |
129 |
Q |
| |
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||||||||||||||| | |||| |||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||| |||| |||||| |||||||| |
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| T |
28915651 |
atagaaaaatggttttggaaatgagtttccattttaacttggaaaccactactttgattgaaaccaggtttcagaattgtgggacattgcagcagaaaat |
28915750 |
T |
|
| Q |
130 |
attgttggcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacattagaaagctggagcagaatttcttg |
229 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
28915751 |
attgttagcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgatagatacatctttgggcacattagaaagccggagcagaatttcttg |
28915850 |
T |
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| Q |
230 |
gttgatgtcatcttgctttgatgatct |
256 |
Q |
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|||||| || ||||| ||||||||||| |
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| T |
28915851 |
gttgatttcgtcttggtttgatgatct |
28915877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 28933772 - 28933993
Alignment:
| Q |
17 |
atattcaacatctaatagaaaaatggtttagaaaattagtttc-attttaacttggaaaatactactttgattgcaaccaggattcagaattgggggata |
115 |
Q |
| |
|
|||| |||||||| ||||||| |||||||||||||| |||||| | ||| ||||||||| ||||| |||||||||||||| |||| || ||| | ||| |
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| T |
28933772 |
atatccaacatcttatagaaatatggtttagaaaataagtttccacttttacttggaaactacta---tgattgcaaccaggtttcataaatggagaata |
28933868 |
T |
|
| Q |
116 |
ttgcatcagaaaatattgttggcaa-------agtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacattaga |
208 |
Q |
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|||| ||||||||| |||| ||| |||| ||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||| |
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| T |
28933869 |
ttgcggcagaaaatactgttagcagttatcacagtattaatacctcagaaaagtcatcgtcagatattttgctgataggtacatcttttggcacattaga |
28933968 |
T |
|
| Q |
209 |
aagctggagcagaatttcttggttg |
233 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28933969 |
gagctggagcagaatttcttggttg |
28933993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 28890709 - 28890965
Alignment:
| Q |
17 |
atattcaacatctaatagaaaaatggtttagaaaattagtttc-attttaacttggaaaatactactttgattgcaaccaggattcagaattgggggata |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| | ||| ||||| || | ||||| || ||||||||||| |||| || | ||| | | |
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| T |
28890709 |
atattcaacatcttatagaaaaatggtttagaaaatgagtttccacttttacttgaaacag-ctactctgtttgcaaccaggtttcaaaaattgggtaaa |
28890807 |
T |
|
| Q |
116 |
ttgcatcagaaaatattgttgg-------caaagtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacattaga |
208 |
Q |
| |
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||||| |||||||| |||| | || | || ||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||| ||| |
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| T |
28890808 |
ttgcagtagaaaatactgttagtagttagcacaatattaatacctcagaaaagtcatcatcagaaattttgctgataggtacatcttctgccacataaga |
28890907 |
T |
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| Q |
209 |
aagctggagcagaatttcttggttgatgtcatcttgctttgatgatctgttgattcct |
266 |
Q |
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|||| ||||| |||||||||||| ||| || || | |||||||||||| ||||||||| |
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| T |
28890908 |
aagccggagctgaatttcttggtagatttcctccttctttgatgatcttttgattcct |
28890965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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