View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3605_low_54 (Length: 278)

Name: NF3605_low_54
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3605_low_54
NF3605_low_54
[»] chr2 (3 HSPs)
chr2 (80-172)||(2463487-2463579)
chr2 (1-78)||(2463376-2463453)
chr2 (166-228)||(2463970-2464032)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 2463487 - 2463579
Alignment:
Q  80 ttggtttgaatctttgtcaatcttatgctctttttgctgagcttatgggagtgattcttgcaattgagttcgcttattaaggaaacatgaatt 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2463487 ttggtttgaatctttgtcaatcttatgctctttttgctgagcttatgggagtgattcttgcaattgagttcgcttattaaggaaacatgaatt 2463579  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2463376 - 2463453
Alignment:
Q  1 gtcatatgacaacctcctttgtttaactggatcaaatctaatacagatgacacatcgttaggttctcttggcccttct 78  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2463376 gtcatacgacaacctcctttgtttaactggatcaaatctaatacagatgacacatccttaggttctcttggcccttct 2463453  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 2463970 - 2464032
Alignment:
Q  166 atgaattgcggtagaaaagaggcaatgggattaagacgtctgagtatttgtgtccatcttttg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  2463970 atgaattgcggtagaaaagaggcaatgggattaagacgtctgaatatttgtgtccaacttttg 2464032  T

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