View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_57 (Length: 264)
Name: NF3605_low_57
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_57 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 188814 - 188581
Alignment:
| Q |
14 |
agaatgtgcaagatatattatagtttgtaatgtatatcaaacttcccatcattgatatccatatgaaagaaaatctaggattatttttatccttatacca |
113 |
Q |
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| T |
188814 |
agaatgtgtaagatatattatagtttgtaatgtatatcaaacttcccatcattgatatcaatatgaaagaaaatctaggattatttttatccttatacca |
188715 |
T |
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| Q |
114 |
caattcaccaaactttgttgtaagatatagatttatagcatcgatctttatgccaatttatatcatagtaaatttgtaattacggactagctttctattg |
213 |
Q |
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| T |
188714 |
caattcaccaaactttgttgtaagatatagatttatagcatcgatctttatgccaatttatatcatagtaaatttgtaattacggactagctttctattg |
188615 |
T |
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| Q |
214 |
acaagctactgatccctactcaggcctaggacct |
247 |
Q |
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| T |
188614 |
acaagctactgatccccactcaggcctaggacct |
188581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 188319 - 188211
Alignment:
| Q |
117 |
ttcaccaaactttgttgtaagatatagatttatagcatcgatctttatgccaatttatatcatagtaaatttgtaattacggactagctttctattgaca |
216 |
Q |
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|||| |||||||||||| ||| |||||| ||| ||| | |||||||||| |||||||| | |||||||||| || |||| || ||||| ||| |||| | |
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| T |
188319 |
ttcagcaaactttgttggaagttatagaattaaagccttgatctttatgtcaatttatgtagtagtaaatttctatttactgattagctatctgttgaaa |
188220 |
T |
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| Q |
217 |
agctactga |
225 |
Q |
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| T |
188219 |
agccactga |
188211 |
T |
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