View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_58 (Length: 260)
Name: NF3605_low_58
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 9123697 - 9123452
Alignment:
| Q |
1 |
aatgtcacaaaagcttgtggatcaatgtcttgtagtgcaagaaataaaagaaagtttgaatttgaagagaagaagtgtccgaattccgtggnnnnnnngg |
100 |
Q |
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| T |
9123697 |
aatgtcacaaaagcttgtggatcaatgtcttgtagtgcaagaaataaaaggaagtttgaatttgaagagaagaagtgtccgaattccgtggaaaagaagg |
9123598 |
T |
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| Q |
101 |
ttgagaagcaacatgttgtggatagcatattggatgcacaaagtaatatgtttggttacaataaaggtagcttggaaaggaagaaacaaagggaagctgc |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9123597 |
ttaagaagcaacatgttgtggatagcatattggatgcacaaagtaatttgtttggttgcaataatggtagcttggaaaggaagaaacaaagggaagctgc |
9123498 |
T |
|
| Q |
201 |
taaattgatgatacaaagcataaaaagaacggcgtttattgatgat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123497 |
taaattgatgatacaaagcataaaaagaacggcgtttattgatgat |
9123452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 9131804 - 9131559
Alignment:
| Q |
1 |
aatgtcacaaaagcttgtggatcaatgtcttgtagtgcaagaaataaaagaaagtttgaatttgaagagaagaagtgtccgaattccgtggnnnnnnngg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
9131804 |
aatgtcacaaaagcttgtggatcaatgtcttgtagtgcaagaaataaaaggaagtttgaatttgaagagaagaagtgtccgaattccgtggaaaagaagg |
9131705 |
T |
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| Q |
101 |
ttgagaagcaacatgttgtggatagcatattggatgcacaaagtaatatgtttggttacaataaaggtagcttggaaaggaagaaacaaagggaagctgc |
200 |
Q |
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| T |
9131704 |
ttaagaagcaacatgttgtggatagcatattggatgcacaaagtaatttgtttggttgcaataatggtagcttggaaaggaagaaacaaagggaagctgc |
9131605 |
T |
|
| Q |
201 |
taaattgatgatacaaagcataaaaagaacggcgtttattgatgat |
246 |
Q |
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| T |
9131604 |
taaattgatgatacaaagcataaaaagaacggcgtttattgatgat |
9131559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 24525565 - 24525320
Alignment:
| Q |
1 |
aatgtcacaaaagcttgtggatcaatgtcttgtagtgcaagaaataaaagaaagtttgaatttgaagagaagaagtgtccgaattccgtggnnnnnnngg |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |
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| T |
24525565 |
aatgtcacaaaagcttgtggatcaatgtcttgcagtgcaagaaataaaaggaagtttgaatttgaagagaagaagtgtccgaattctgtggaaaagaagg |
24525466 |
T |
|
| Q |
101 |
ttgagaagcaacatgttgtggatagcatattggatgcacaaagtaatatgtttggttacaataaaggtagcttggaaaggaagaaacaaagggaagctgc |
200 |
Q |
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|| |||||||||||||| | ||||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||| |
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| T |
24525465 |
ttaagaagcaacatgttatagatagcatattagatgcacaaagtaatttgtttggttgcaataatggtagcttggaaaggaagaaacaaagagaagctgc |
24525366 |
T |
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| Q |
201 |
taaattgatgatacaaagcataaaaagaacggcgtttattgatgat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525365 |
taaattgatgatacaaagcataaaaagaacggcgtttattgatgat |
24525320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 39814940 - 39815021
Alignment:
| Q |
144 |
taatatgtttggttacaataaaggtagcttggaaaggaagaaacaaagggaagctgctaaattgatgatacaaagcataaaa |
225 |
Q |
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|||| ||||||||| | |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39814940 |
taatttgtttggttgcgataatgttagcttgaaaaggaagaaacaaagggaagctgctaaattgatgatacaaagcataaaa |
39815021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39814800 - 39814861
Alignment:
| Q |
1 |
aatgtcacaaaagcttgtggatcaatgtcttgtagtgcaagaaataaaagaaagtttgaatt |
62 |
Q |
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||||||||||||| |||| ||||| |||| ||| |||||||||||||||| ||||||||||| |
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| T |
39814800 |
aatgtcacaaaagtttgtagatcagtgtcatgtggtgcaagaaataaaaggaagtttgaatt |
39814861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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