View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3605_low_6 (Length: 632)

Name: NF3605_low_6
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3605_low_6
NF3605_low_6
[»] chr1 (15 HSPs)
chr1 (386-549)||(10463121-10463284)
chr1 (386-549)||(43732775-43732938)
chr1 (384-549)||(50671929-50672101)
chr1 (211-312)||(50674120-50674221)
chr1 (212-312)||(43732618-43732718)
chr1 (211-307)||(50671762-50671858)
chr1 (212-306)||(10462965-10463059)
chr1 (211-307)||(10467889-10467985)
chr1 (211-307)||(7284504-7284600)
chr1 (556-618)||(10463313-10463375)
chr1 (556-618)||(43732967-43733029)
chr1 (226-307)||(43737542-43737623)
chr1 (556-618)||(50672128-50672190)
chr1 (384-422)||(50674017-50674055)
chr1 (1-68)||(24880757-24880824)
[»] chr3 (12 HSPs)
chr3 (394-548)||(5913209-5913363)
chr3 (556-618)||(5913119-5913181)
chr3 (216-307)||(5907864-5907957)
chr3 (248-307)||(5913408-5913467)
chr3 (1-68)||(37311835-37311901)
chr3 (1-65)||(27471224-27471287)
chr3 (1-68)||(33491524-33491590)
chr3 (1-68)||(36460579-36460645)
chr3 (1-68)||(43254027-43254093)
chr3 (1-71)||(31158673-31158742)
chr3 (1-68)||(24569259-24569326)
chr3 (1-61)||(37773129-37773188)
[»] chr8 (13 HSPs)
chr8 (398-549)||(25864287-25864438)
chr8 (212-307)||(25860013-25860108)
chr8 (212-307)||(25864513-25864608)
chr8 (556-618)||(25864196-25864258)
chr8 (216-312)||(32327044-32327139)
chr8 (1-68)||(10953896-10953962)
chr8 (1-68)||(10961901-10961967)
chr8 (1-71)||(44761656-44761725)
chr8 (1-61)||(39482505-39482564)
chr8 (1-68)||(26626276-26626342)
chr8 (3-68)||(7172815-7172879)
chr8 (474-511)||(32327308-32327345)
chr8 (4-68)||(11977103-11977166)
[»] chr7 (17 HSPs)
chr7 (396-549)||(48577654-48577807)
chr7 (216-312)||(27981406-27981502)
chr7 (401-489)||(32955469-32955557)
chr7 (556-615)||(32955356-32955415)
chr7 (556-618)||(48577565-48577627)
chr7 (212-312)||(27965419-27965519)
chr7 (241-299)||(32954355-32954413)
chr7 (216-282)||(48577824-48577890)
chr7 (1-68)||(28103623-28103689)
chr7 (1-68)||(21350796-21350862)
chr7 (249-300)||(32955644-32955695)
chr7 (1-68)||(34100717-34100783)
chr7 (1-69)||(25571312-25571379)
chr7 (1-68)||(6495103-6495169)
chr7 (1-68)||(11373598-11373664)
chr7 (1-68)||(38391645-38391711)
chr7 (1-68)||(33819104-33819171)
[»] chr5 (6 HSPs)
chr5 (1-87)||(6616041-6616126)
chr5 (1-68)||(4818436-4818502)
chr5 (4-68)||(3348294-3348358)
chr5 (1-69)||(40899803-40899870)
chr5 (1-68)||(2588224-2588290)
chr5 (1-68)||(8698194-8698260)
[»] chr2 (6 HSPs)
chr2 (445-519)||(203045-203119)
chr2 (260-307)||(203501-203548)
chr2 (1-68)||(14523533-14523599)
chr2 (2-68)||(3601354-3601419)
chr2 (1-62)||(35313779-35313839)
chr2 (241-307)||(202853-202919)
[»] chr4 (7 HSPs)
chr4 (1-69)||(54921862-54921929)
chr4 (1-69)||(47773188-47773255)
chr4 (1-68)||(35380503-35380569)
chr4 (1-68)||(49428510-49428576)
chr4 (502-549)||(53953354-53953401)
chr4 (1-70)||(52859963-52860031)
chr4 (1-49)||(46397040-46397087)
[»] scaffold0755 (2 HSPs)
scaffold0755 (241-312)||(4399-4470)
scaffold0755 (474-511)||(4640-4677)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-68)||(1442-1508)
[»] chr6 (5 HSPs)
chr6 (4-68)||(3720406-3720469)
chr6 (1-68)||(30716785-30716851)
chr6 (1-68)||(32440809-32440875)
chr6 (1-69)||(181442-181509)
chr6 (1-65)||(21010060-21010123)
[»] scaffold0072 (1 HSPs)
scaffold0072 (241-312)||(48441-48512)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 7e-66; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 386 - 549
Target Start/End: Original strand, 10463121 - 10463284
Alignment:
Q  386 gatccagcaaacatgttctttctcgcttccagcaaacgcgatccagaaaccacccccgattttctttgccgtccgccgccataaccatcaaccaccgccc 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| || |||||||||||||||||||    
T  10463121 gatccagcaaacatgttctttctcgcttccagcaaacgcgatccagaaaccaccaccggttttcttcgccgtccgccaccgtaaccatcaaccaccgccc 10463220  T
Q  486 tccgccgcactgttgaacatcaatttatcacaggccgtcgtctattcacatccctccttctcaa 549  Q
    ||||||||||||||| |||||||||||||||||| |||||  ||||||||||||||||||||||    
T  10463221 tccgccgcactgttgtacatcaatttatcacaggtcgtcggttattcacatccctccttctcaa 10463284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 386 - 549
Target Start/End: Original strand, 43732775 - 43732938
Alignment:
Q  386 gatccagcaaacatgttctttctcgcttccagcaaacgcgatccagaaaccacccccgattttctttgccgtccgccgccataaccatcaaccaccgccc 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| || |||||||||||||||||||    
T  43732775 gatccagcaaacatgttctttctcgcttccagcaaacgcgatccagaaaccaccaccggttttcttcgccgtccgccaccgtaaccatcaaccaccgccc 43732874  T
Q  486 tccgccgcactgttgaacatcaatttatcacaggccgtcgtctattcacatccctccttctcaa 549  Q
    ||||||||||||||| |||||||||||||||||| |||||  ||||||||||||||||||||||    
T  43732875 tccgccgcactgttgtacatcaatttatcacaggtcgtcggttattcacatccctccttctcaa 43732938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 384 - 549
Target Start/End: Original strand, 50671929 - 50672101
Alignment:
Q  384 gcgatccagcaaacatgttctttctcgcttccagcaaacgcgatccagaaaccacccccgattttctttgccgtccgccgccataaccatcaacca---- 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||        
T  50671929 gcgatccagcaaacatgttctttctcgcttccagcaaacgcgatccagaaaccaccaccggttttcttcgccgtccgccgccataaccatcaaccaccgc 50672028  T
Q  480 ---ccgccctccgccgcactgttgaacatcaatttatcacaggccgtcgtctattcacatccctccttctcaa 549  Q
       ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  50672029 cctccgccctccgccgcactgttgaacatcaatttatcacaggccgtcggttattcacatccctccttctcaa 50672101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 211 - 312
Target Start/End: Complemental strand, 50674221 - 50674120
Alignment:
Q  211 cggggagcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaacag 310  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  50674221 cgggaagcacttcagtgccatagcaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaggcttattaaaataataaaaaaatag 50674122  T
Q  311 aa 312  Q
    ||    
T  50674121 aa 50674120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 43732618 - 43732718
Alignment:
Q  212 ggggagcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaacaga 311  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||| |||    
T  43732618 ggggagcacttcagtgccatagcaatatggtgccattgtgccataggaccaattagaatttgacacgtgtcaaggcttattaaaataataaaaaaataga 43732717  T
Q  312 a 312  Q
    |    
T  43732718 a 43732718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 50671762 - 50671858
Alignment:
Q  211 cggggagcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaa 307  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  50671762 cgggaagcacttcagtgccatagcaatatggtgccattgtgccataggatcaatcagattttgacacgtgtcaaggcttattaaaataataaaaaaa 50671858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 10462965 - 10463059
Alignment:
Q  212 ggggagcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaa 306  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |||||    
T  10462965 ggggagcacttcagtgccatagcaatatggtgccattgtgccataggaccaattagaatttgacacgtgtcaaggcttattaaaataataaaaaa 10463059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 10467985 - 10467889
Alignment:
Q  211 cggggagcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaa 307  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||    
T  10467985 cgggaagcacttcagtgccatagcaatatggtgccattgtgccataggaccaattagaatttgacacgtgtcaaggcttattaaaataataaaaaaa 10467889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 7284600 - 7284504
Alignment:
Q  211 cggggagcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaa 307  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||||||||||||| ||||||    
T  7284600 cgggaagcacttcagtgccatagcaatatggtgccattgtgccataggatcaattagaatttgacacgtgtcaaggcttattaaaataataaaaaaa 7284504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 556 - 618
Target Start/End: Original strand, 10463313 - 10463375
Alignment:
Q  556 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaag 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10463313 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaag 10463375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 556 - 618
Target Start/End: Original strand, 43732967 - 43733029
Alignment:
Q  556 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaag 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43732967 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaag 43733029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 43737623 - 43737542
Alignment:
Q  226 tgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaa 307  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||    
T  43737623 tgccatagcaatatggtgccattgtgccataggaccaattagaatttgacacgtgtcaaggcttattaaaataataaaaaaa 43737542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 556 - 618
Target Start/End: Original strand, 50672128 - 50672190
Alignment:
Q  556 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaag 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50672128 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaaggattgcaggaag 50672190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 50674055 - 50674017
Alignment:
Q  384 gcgatccagcaaacatgttctttctcgcttccagcaaac 422  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50674055 gcgatccagcaaacatgttctttctcgcttccagcaaac 50674017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 24880824 - 24880757
Alignment:
Q  1 aagtgacaattatttgaagaaaaaga-aaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    ||||||||||||||| |||||||||| |||| |||||||| |||| || ||| ||| ||||||||||||    
T  24880824 aagtgacaattattttaagaaaaagaaaaaaatgttaaaa-agactattattgtgagacggagggagta 24880757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 394 - 548
Target Start/End: Complemental strand, 5913363 - 5913209
Alignment:
Q  394 aaacatgttctttctcgcttccagcaaacgcgatccagaaaccacccccgattttctttgccgtccgccgccataaccatcaaccaccgccctccgccgc 493  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||| || |    
T  5913363 aaacatgttctttctcccttccagcaaacgcgatccagaacccaccaccggttttcttcgccgtccgccgccataaccatcaaccaccaccctccaccac 5913264  T
Q  494 actgttgaacatcaatttatcacaggccgtcgtctattcacatccctccttctca 548  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5913263 actgttgaacatcaatttatcacaggccgccggctattcacatccctccttctca 5913209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 556 - 618
Target Start/End: Complemental strand, 5913181 - 5913119
Alignment:
Q  556 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaag 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5913181 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaag 5913119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 5907864 - 5907957
Alignment:
Q  216 agcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattt--tgacacgtgtcaaagcttattaaaataattaaaaaa 307  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||| ||||  | ||||||||||| ||||||||||||||| ||||||    
T  5907864 agcacttcagtgccatagtaatatggtgccattgtgccataggaccaatcatattttattacacgtgtcaaggcttattaaaataataaaaaaa 5907957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 5913467 - 5913408
Alignment:
Q  248 tgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaa 307  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  5913467 tgtgccataggaccaatcatattttgacacgtgtcaaggcttattaaaataataaaaaaa 5913408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37311901 - 37311835
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    ||||||||||||||| |||||||||||||| |||| |||  |||||||||| ||| ||||||||||||    
T  37311901 aagtgacaattattttaagaaaaagaaaaaatgtt-aaattgacaataattgtgagacggagggagta 37311835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27471287 - 27471224
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggaggga 65  Q
    |||||||||||||||  ||||||||||||| || | ||||||||||||||| ||| |||||||||    
T  27471287 aagtgacaattattttgagaaaaagaaaaaatgct-aaagagacaataattgtgagacggaggga 27471224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 33491524 - 33491590
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  ||||||||||||| |||||||| |||| |||||| ||| ||||| ||||||    
T  33491524 aagtgacaattattttgagaaaaagaaaaaatgttaaaa-agactataattatgagacggaaggagta 33491590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 36460579 - 36460645
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  ||||||| ||||||||  |||||||||||||||| | | ||||||||||||    
T  36460579 aagtgacaattattttgagaaaaataaaaattg-caaaagagacaataattataagacggagggagta 36460645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 43254027 - 43254093
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  ||||| ||||||| || |||| |||||||||||| ||| ||||||||||||    
T  43254027 aagtgacaattattttgagaaatagaaaaaatgctaaa-gagacaataattgtgagacggagggagta 43254093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31158673 - 31158742
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagtacat 71  Q
    |||||| ||||||||  ||||||||||||| |||||||| ||||||||||| ||| | ||| |||||||||    
T  31158673 aagtgagaattattttgagaaaaagaaaaaatgttaaaa-agacaataattgtgagatggaaggagtacat 31158742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 24569259 - 24569326
Alignment:
Q  1 aagtgacaattattt-gaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    ||||||||||||||| ||| ||||||||||| | ||||| |||||||| ||| ||| ||||||||||||    
T  24569259 aagtgacaattattttgaaaaaaaagaaaaaatattaaa-gagacaattattgtgagacggagggagta 24569326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37773129 - 37773188
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacgga 61  Q
    |||||||||||||||  |||||||||||||||| | ||||||||||| ||| ||| |||||    
T  37773129 aagtgacaattattttgagaaaaagaaaaattgct-aaagagacaattattgtgagacgga 37773188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 398 - 549
Target Start/End: Complemental strand, 25864438 - 25864287
Alignment:
Q  398 atgttctttctcgcttccagcaaacgcgatccagaaaccacccccgattttctttgccgtccgccgccataaccatcaaccaccgccctccgccgcactg 497  Q
    ||||||||||||||||||||||||||| ||||||||||||||   | ||||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  25864438 atgttctttctcgcttccagcaaacgcaatccagaaaccaccattggttttcttcgccgtctgccgccgtaaccatcaaccaccgccctccgccgcactg 25864339  T
Q  498 ttgaacatcaatttatcacaggccgtcgtctattcacatccctccttctcaa 549  Q
    ||| ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  25864338 ttgtacatcaatttatcacaggccgtcggttattcacatccctccttctcaa 25864287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 25860013 - 25860108
Alignment:
Q  212 ggggagcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaa 307  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||    
T  25860013 ggggagcacttcagtgccatagcaatatggtgccattgtgccataggaccaattagaatttgacacgtgtcaaggcttattaaaataataaaaaaa 25860108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 212 - 307
Target Start/End: Complemental strand, 25864608 - 25864513
Alignment:
Q  212 ggggagcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaa 307  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||    
T  25864608 ggggagcacttcagtgccatagcaatatggtgtcattgtgccataggaccaattagaatttgacacgtgtcaaagcttattaaaataataaaaaaa 25864513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 556 - 618
Target Start/End: Complemental strand, 25864258 - 25864196
Alignment:
Q  556 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaag 618  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25864258 ttttggtgaataagatttttggcttatcaagacgatttttggtgtgtcaagggttgcaggaag 25864196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 32327044 - 32327139
Alignment:
Q  216 agcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaacagaa 312  Q
    |||||||||||||||||     ||||||||||| |||||| |  ||||||| ||||||||||||| ||| ||| |||||||||| ||||||||||||    
T  32327044 agcacttcagtgccatagtgtcatggtgccattttgccattgccccaatcatattttgacacgtggcaatgctcattaaaataa-taaaaaacagaa 32327139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10953896 - 10953962
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  ||||||||||||| |||| ||||||||||||||| ||||||  ||||||||    
T  10953896 aagtgacaattattttgagaaaaagaaaaaatgtt-aaagagacaataattgtgatacaaagggagta 10953962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10961901 - 10961967
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  ||||||||||||| |||| ||||||||||||||| ||||||  ||||||||    
T  10961901 aagtgacaattattttgagaaaaagaaaaaatgtt-aaagagacaataattgtgatacaaagggagta 10961967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 44761656 - 44761725
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagtacat 71  Q
    |||||||||||||||  ||||||||||||| || || | |||||||||||| ||| |||||||||||||||    
T  44761656 aagtgacaattattttgagaaaaagaaaaaatgctaga-gagacaataattgtgagacggagggagtacat 44761725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 39482564 - 39482505
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacgga 61  Q
    |||||||||||||||  ||||||| |||||||| | ||||||||||||||||||| |||||    
T  39482564 aagtgacaattattttgagaaaaataaaaattgct-aaagagacaataattttgagacgga 39482505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26626276 - 26626342
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  |||||||||||||| | | ||||||||||| ||||||| ||||| ||||||    
T  26626276 aagtgacaattattttgagaaaaagaaaaatggat-aaagagacaattattttgagacggatggagta 26626342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 7172879 - 7172815
Alignment:
Q  3 gtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    ||||||||||| | |||||||| ||||| || |||| |||||||||||| ||| ||||||||||||    
T  7172879 gtgacaattatattaagaaaaataaaaaatggtaaa-gagacaataattgtgagacggagggagta 7172815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 32327308 - 32327345
Alignment:
Q  474 caaccaccgccctccgccgcactgttgaacatcaattt 511  Q
    |||||||||||||||||||||| || ||||||||||||    
T  32327308 caaccaccgccctccgccgcaccgtcgaacatcaattt 32327345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 11977103 - 11977166
Alignment:
Q  4 tgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||| |||||||||||||| || | ||| | ||||||||| ||| ||||||||||||    
T  11977103 tgacaattattttaagaaaaagaaaaaatggt-aaacatacaataattatgagacggagggagta 11977166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 396 - 549
Target Start/End: Complemental strand, 48577807 - 48577654
Alignment:
Q  396 acatgttctttctcgcttccagcaaacgcgatccagaaaccacccccgattttctttgccgtccgccgccataaccatcaaccaccgccctccgccgcac 495  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||  || ||||||| | ||||||||||||||| | |||||||||||||||||||||||    
T  48577807 acatgttcattctcgctttcagaaaacgcgatccagaaaccaccatcggttttcttcgtcgtccgccgccataagcttcaaccaccgccctccgccgcac 48577708  T
Q  496 tgttgaacatcaatttatcacaggccgtcgtctattcacatccctccttctcaa 549  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  48577707 tgttgaacatcaatttatcacaggccgccggctattcacatccctccttctcaa 48577654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 27981502 - 27981406
Alignment:
Q  216 agcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaacagaa 312  Q
    |||||||||||||||||  ||||||||| ||||||| ||||| |||||||| ||||||||||||||||| |||| |||||||||| |||||||||||    
T  27981502 agcacttcagtgccatagtaatatggtgacattgtgacatagaaccaatcaaattttgacacgtgtcaaggctttttaaaataataaaaaaacagaa 27981406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 401 - 489
Target Start/End: Complemental strand, 32955557 - 32955469
Alignment:
Q  401 ttctttctcgcttccagcaaacgcgatccagaaaccacccccgattttctttgccgtccgccgccataaccatcaaccaccgccctccg 489  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||| ||||||| |||||||||    
T  32955557 ttctttctcgcttccagaaaacgcgattcagaaaccaccaccggttttcttcgccgtccgccgccataaccttcaaccatcgccctccg 32955469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 556 - 615
Target Start/End: Complemental strand, 32955415 - 32955356
Alignment:
Q  556 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcagg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32955415 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcagg 32955356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 556 - 618
Target Start/End: Complemental strand, 48577627 - 48577565
Alignment:
Q  556 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaag 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48577627 ttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaatggttgcaggaag 48577565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 27965419 - 27965519
Alignment:
Q  212 ggggagcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaacaga 311  Q
    |||| ||||||||||||||||  ||||||||| ||||||| ||||| || |||||||||||||||| |||||| |||| |||||||||| ||||||||||    
T  27965419 ggggtgcacttcagtgccatagtaatatggtgacattgtgacatagaactaatcagattttgacacatgtcaaggctttttaaaataataaaaaaacaga 27965518  T
Q  312 a 312  Q
    |    
T  27965519 a 27965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 32954355 - 32954413
Alignment:
Q  241 gtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataa 299  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  32954355 gtgccattgtgccataggaccaatcatattttgacacgtgtcaaggcttattaaaataa 32954413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 48577890 - 48577824
Alignment:
Q  216 agcacttcagtgccataacaatatggtgccattgtgccataggaccaatcagattttgacacgtgtc 282  Q
    |||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  48577890 agcacttcagtgccatagtaatatggtgccattgtgcgataagaccaatcagattttgacacgtgtc 48577824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28103689 - 28103623
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  |||||||||||||||||| ||||||| ||||||| ||| ||||||||||||    
T  28103689 aagtgacaattattttgagaaaaagaaaaattgtt-aaagagataataattgtgagacggagggagta 28103623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 21350796 - 21350862
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  ||||||||||||| |||||||| ||||||||||| ||| || |||||||||    
T  21350796 aagtgacaattattttgagaaaaagaaaaaatgttaaaa-agacaataattgtgagacagagggagta 21350862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 32955695 - 32955644
Alignment:
Q  249 gtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataat 300  Q
    |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||    
T  32955695 gtgccataggaccaatcatattttaacatgtgtcaaggcttattaaaataat 32955644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34100717 - 34100783
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    ||||||||||||||| |||||||| ||||| |||| |||| |||||||||| ||| ||||||||||||    
T  34100717 aagtgacaattattttaagaaaaataaaaaatgtt-aaagtgacaataattgtgagacggagggagta 34100783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 25571379 - 25571312
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagtac 69  Q
    |||||||||||||||  ||||||||||||| |  |||| |||||||| ||||||| |||||||||||||    
T  25571379 aagtgacaattattttgagaaaaagaaaaaatagtaaa-gagacaattattttgagacggagggagtac 25571312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 6495103 - 6495169
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  |||||||||||||| | | ||||||||||| ||| ||| ||||||||||||    
T  6495103 aagtgacaattattttgagaaaaagaaaaatgggt-aaagagacaattattatgagacggagggagta 6495169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11373598 - 11373664
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||| ||||||||||  ||||||||||||| || |||| |||||||||||| ||| ||||||||||||    
T  11373598 aagtaacaattattttgagaaaaagaaaaaatggtaaa-gagacaataattgtgagacggagggagta 11373664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 38391711 - 38391645
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  ||||||||||||| || | ||||||||||| ||| ||| ||||||||||||    
T  38391711 aagtgacaattattttgagaaaaagaaaaaatggt-aaagagacaattattgtgagacggagggagta 38391645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33819171 - 33819104
Alignment:
Q  1 aagtgacaattattt-gaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    ||||||||||||||| ||| |||||  |||| ||||||| |||||||||||| ||| ||||||||||||    
T  33819171 aagtgacaattattttgaaaaaaaaagaaaaatgttaaa-gagacaataattgtgagacggagggagta 33819104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 6616041 - 6616126
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagtacatgtgaatgagtaaaaat 87  Q
    |||||||||||||||  |||||||||||||||| |||| |||||||||||  ||| | ||| ||||| |||||||||||||||||||    
T  6616041 aagtgacaattattttgagaaaaagaaaaattgctaaa-gagacaataatcgtgagatggatggagtgcatgtgaatgagtaaaaat 6616126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4818502 - 4818436
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||||||| ||| ||||| ||||||    
T  4818502 aagtgacaattattttgagaaaaagaaaaattgtt-aaagagacaataattgtgagacggatggagta 4818436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 3348294 - 3348358
Alignment:
Q  4 tgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    ||||||||||||  |||||||||||||| | ||||| ||||||| ||| ||| ||||||||||||    
T  3348294 tgacaattattttgagaaaaagaaaaatagataaaaaagacaattattgtgagacggagggagta 3348358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40899870 - 40899803
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagtac 69  Q
    |||||||||||||||  |||||||||||| ||| | ||||||||||| ||| ||| |||||||||||||    
T  40899870 aagtgacaattattttgagaaaaagaaaatttgat-aaagagacaattattgtgagacggagggagtac 40899803  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2588224 - 2588290
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  |||||||||||||| | | ||||||||||| ||| ||| ||||||||||||    
T  2588224 aagtgacaattattttgagaaaaagaaaaataggt-aaagagacaattattgtgagacggagggagta 2588290  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8698260 - 8698194
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  |||||||||||||||| | ||||||||||||||| | | ||||| ||||||    
T  8698260 aagtgacaattattttgagaaaaagaaaaattgct-aaagagacaataattataaaacggatggagta 8698194  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 445 - 519
Target Start/End: Original strand, 203045 - 203119
Alignment:
Q  445 ttttctttgccgtccgccgccataaccatcaaccaccgccctccgccgcactgttgaacatcaatttatcacagg 519  Q
    ||||||| ||||  ||||||||| |||  ||||||||||||||||||||||||| |||||||||||| |||||||    
T  203045 ttttcttcgccgatcgccgccatgacctgcaaccaccgccctccgccgcactgtcgaacatcaatttgtcacagg 203119  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 203548 - 203501
Alignment:
Q  260 ccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaa 307  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  203548 ccaatcagattttgacacgtggcaatgctaattaaaataattaaaaaa 203501  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14523533 - 14523599
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  ||||||||||||| |||| ||||||||||| ||| ||| ||||||||||||    
T  14523533 aagtgacaattattttgagaaaaagaaaaagtgtt-aaagagacaattattatgagacggagggagta 14523599  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 3601419 - 3601354
Alignment:
Q  2 agtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    ||||||||||||||  ||||||||||||| || |||| |||||||||||| ||| ||||||||||||    
T  3601419 agtgacaattattttgagaaaaagaaaaaatgctaaa-gagacaataattgtgagacggagggagta 3601354  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35313839 - 35313779
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggag 62  Q
    |||||||||||||||  ||||||||||||| |||| ||||||||||||||| ||| ||||||    
T  35313839 aagtgacaattattttgagaaaaagaaaaaatgtt-aaagagacaataattgtgagacggag 35313779  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 202853 - 202919
Alignment:
Q  241 gtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaa 307  Q
    |||||||||||||||    ||||||| ||||||||||||| ||| ||| ||||||||||| ||||||    
T  202853 gtgccattgtgccattaccccaatcaaattttgacacgtggcaatgctaattaaaataataaaaaaa 202919  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 54921862 - 54921929
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagtac 69  Q
    ||||||||||||||| || |||||||||||||||||||| ||||||||||| ||| ||||||| |||||    
T  54921862 aagtgacaattattttaaaaaaaagaaaaattgttaaaa-agacaataattatgagacggaggaagtac 54921929  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 47773188 - 47773255
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagtac 69  Q
    |||||||||||||||  |||||||||||||| | ||||| ||||||| ||| ||| |||||||||||||    
T  47773188 aagtgacaattattttgagaaaaagaaaaatgggtaaaa-agacaattattgtgagacggagggagtac 47773255  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 35380503 - 35380569
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  |||||||||||||||| | ||||||| ||||||| ||| ||||| ||||||    
T  35380503 aagtgacaattattttgagaaaaagaaaaattgct-aaagagataataattgtgagacggatggagta 35380569  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 49428510 - 49428576
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  ||||||||||||| || | ||||||||||| ||| ||| ||||||||||||    
T  49428510 aagtgacaattattttgagaaaaagaaaaaatggt-aaagagacaattattgtgagacggagggagta 49428576  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 549
Target Start/End: Complemental strand, 53953401 - 53953354
Alignment:
Q  502 acatcaatttatcacaggccgtcgtctattcacatccctccttctcaa 549  Q
    |||||||| |||||||||||| || | |||||||||||||||||||||    
T  53953401 acatcaatctatcacaggccgccggcgattcacatccctccttctcaa 53953354  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 52859963 - 52860031
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagtaca 70  Q
    |||||||||||||||  |||||||||||||| | | |||| |||||| ||| ||| ||||||||||||||    
T  52859963 aagtgacaattattttgagaaaaagaaaaatgggt-aaagggacaattattatgagacggagggagtaca 52860031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46397040 - 46397087
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataa 49  Q
    ||||||||||||||| |||||| ||||||| |||| |||||||||||||    
T  46397040 aagtgacaattattttaagaaatagaaaaaatgtt-aaagagacaataa 46397087  T

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Target: scaffold0755 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 4399 - 4470
Alignment:
Q  241 gtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaacagaa 312  Q
    ||||||| ||||||| |  ||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||    
T  4399 gtgccatggtgccattgccccaatcagattttgacacgtggcaatgctaattaaaataataaaaaaacagaa 4470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 4640 - 4677
Alignment:
Q  474 caaccaccgccctccgccgcactgttgaacatcaattt 511  Q
    |||||||||||||||||||||| || ||||||||||||    
T  4640 caaccaccgccctccgccgcaccgtcgaacatcaattt 4677  T

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Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 1508 - 1442
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    ||||||||||||||| |||||||||||||| || | ||||||||||| ||| ||| ||||||||||||    
T  1508 aagtgacaattattttaagaaaaagaaaaaatggt-aaagagacaattattgtgagacggagggagta 1442  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 3720406 - 3720469
Alignment:
Q  4 tgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    ||||||||||||  ||||||||||||| || |||| |||||||||||| ||| ||||||||||||    
T  3720406 tgacaattattttgagaaaaagaaaaaatgataaa-gagacaataattgtgagacggagggagta 3720469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30716851 - 30716785
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  |||||||||||||| | ||||| ||||||| ||| ||| ||||||||||||    
T  30716851 aagtgacaattattttgagaaaaagaaaaatgggtaaaa-agacaattattgtgagacggagggagta 30716785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 32440809 - 32440875
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagta 68  Q
    |||||||||||||||  ||||||||||||| || | ||||||||||| ||| ||| ||||||||||||    
T  32440809 aagtgacaattattttgagaaaaagaaaaaatggt-aaagagacaattattgtgagacggagggagta 32440875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 181509 - 181442
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggagggagtac 69  Q
    |||||||||||||||  || |||||||||| |||| ||||||||||||||| ||| |  ||||||||||    
T  181509 aagtgacaattattttgaggaaaagaaaaaatgtt-aaagagacaataattgtgagagagagggagtac 181442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21010123 - 21010060
Alignment:
Q  1 aagtgacaattatttgaagaaaaagaaaaattgttaaaagagacaataattttgatacggaggga 65  Q
    |||||||||||||||  ||||||||||||| || ||||| ||||||| ||| ||| |||||||||    
T  21010123 aagtgacaattattttgagaaaaagaaaaaatggtaaaa-agacaattattatgagacggaggga 21010060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 48441 - 48512
Alignment:
Q  241 gtgccattgtgccataggaccaatcagattttgacacgtgtcaaagcttattaaaataattaaaaaacagaa 312  Q
    ||||||| ||||||| |  | ||||||||||||||||||| ||| ||| ||||||||||| ||| |||||||    
T  48441 gtgccatggtgccattgccctaatcagattttgacacgtggcaatgctaattaaaataataaaacaacagaa 48512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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