View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_60 (Length: 250)
Name: NF3605_low_60
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 7503394 - 7503164
Alignment:
| Q |
14 |
gaacatagtagattattatggatgataaaaaacaacataaaattctttataattataaaacaaataggagaaatttaagaaaacttacacttattatgct |
113 |
Q |
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| T |
7503394 |
gaacatagtagattattatggatgataaaaaacaacataaaattctttataattataaaacaaataggagaaatttaagagaacttacacttattatgct |
7503295 |
T |
|
| Q |
114 |
tgtgtaggggctttgactagagtagttacgatccttctatcattcttga-taaaaggacaacttagcagcctaagaaaaagacatgacaaaacaagtgtc |
212 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||| | |||||||| || | ||||||||| |||||||||| |||||||||||| |
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| T |
7503294 |
tgtgtaggggctttgacttgagtagttataatccttctatcattcttgattcaaaggacatctcaacagcctaag--aaagacatgaaaaaacaagtgtc |
7503197 |
T |
|
| Q |
213 |
aaaagctagctagaaatcaagtcttgatatgatagta |
249 |
Q |
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|| ||||| |||||||||||||||||||||||| |
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| T |
7503196 |
aa----cagctaaaaatcaagtcttgatatgatagta |
7503164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 7719601 - 7719832
Alignment:
| Q |
14 |
gaacatagtagattattatggatgataaaaaacaacataaaattctttataatta-taaaacaaataggagaaatttaagaaaacttacacttattatgc |
112 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
7719601 |
gaacatagtagattattatggatgataaacaacaacataaaattctttataattaataaaacaaataggagaaatttaagagatctgacacttattatgc |
7719700 |
T |
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| Q |
113 |
ttgtgtaggggctttgactagagtagttacgatccttctatcattcttgata-aaaggacaacttagcagcctaagaaaaagacatgacaaaacaagtgt |
211 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| || | |||||||||||| ||||||| ||||||||||| |
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| T |
7719701 |
ttgtgtaggggctttgacttgagtagttataatccttctatcattcttgattcaaaggacatctcaacagcctaagaaa--gacatgaaaaaacaagtgt |
7719798 |
T |
|
| Q |
212 |
caaaagctagctagaaatcaagtcttgatatgatagta |
249 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
7719799 |
caaaagctaa----aaatcaagtcttgatatgatagta |
7719832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 7530926 - 7530721
Alignment:
| Q |
15 |
aacatagtagattattatggatgataaaaaacaacataaa--attctttataattataaaacaaataggagaaatttaagaaaacttacacttattatgc |
112 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
7530926 |
aacatagtaaattattatggatgatgaaaaacaacataaataataatttataattataaaacaaatatgagaaatttaagagaacttacacttattatgc |
7530827 |
T |
|
| Q |
113 |
ttgtgtaggggctttgactagagtagttacgatccttctatcattcttgataaaaggacaacttagcagcctaagaaaaagacatgacaaaacaagtgtc |
212 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
7530826 |
ttgtgtaggggctttgacttgagtagttataatccttctatcatcattgaaaaaaggacaactcagcagcctaag--aaagacatgacaaaacaagtgtc |
7530729 |
T |
|
| Q |
213 |
aaaagcta |
220 |
Q |
| |
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|||||||| |
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| T |
7530728 |
aaaagcta |
7530721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 7497211 - 7497006
Alignment:
| Q |
15 |
aacatagtagattattatggatgataaaaaacaacataaa--attctttataattataaaacaaataggagaaatttaagaaaacttacacttattatgc |
112 |
Q |
| |
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||||||||| ||||||||||||||| || ||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |
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| T |
7497211 |
aacatagtatattattatggatgatgaacaacaacataaataatactttataattataaaacaaatatgagaaatttaagagaacttacacttattattc |
7497112 |
T |
|
| Q |
113 |
ttgtgtaggggctttgactagagtagttacgatccttctatcattcttgataaaaggacaacttagcagcctaagaaaaagacatgacaaaacaagtgtc |
212 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| |||| |||||| ||||||||||||||||||||||| |
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| T |
7497111 |
ttgtgtaggggctttgacttgagtagttataatccttctatcatcattgaaaaaaggacaactcagcatcctaag--aaagacatgacaaaacaagtgtc |
7497014 |
T |
|
| Q |
213 |
aaaagcta |
220 |
Q |
| |
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|||||||| |
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|
| T |
7497013 |
aaaagcta |
7497006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 7522869 - 7522664
Alignment:
| Q |
15 |
aacatagtagattattatggatgataaaaaacaacataaa--attctttataattataaaacaaataggagaaatttaagaaaacttacacttattatgc |
112 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |
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| T |
7522869 |
aacatagtatattattatggatgatgaacaacaacataaataatactttataattataaaacaaatatgagaaatttaagagaacttacactgattatgc |
7522770 |
T |
|
| Q |
113 |
ttgtgtaggggctttgactagagtagttacgatccttctatcattcttgataaaaggacaacttagcagcctaagaaaaagacatgacaaaacaagtgtc |
212 |
Q |
| |
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||| ||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
7522769 |
ttgcgtaggggctttgacttgagtagttataatccttctatcatcattgaaaaaaggacaactcagcagcctaag--aaagacatgacaaaacaagtgtc |
7522672 |
T |
|
| Q |
213 |
aaaagcta |
220 |
Q |
| |
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|||||||| |
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| T |
7522671 |
aaaagcta |
7522664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 7126433 - 7126526
Alignment:
| Q |
147 |
cttctatcattcttgataaaaggacaacttagcagcctaagaaaaagacatgacaaaacaagtgtcaaaagctagctagaaatcaagtcttgatatgata |
246 |
Q |
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||||||||||||| || |||||||||||| ||||||||||| || ||| ||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
7126433 |
cttctatcattctggaaaaaaggacaactcagcagcctaag--aatgacttgacaaaacaattgtcaaa----agctagaaatcaagtcttgatatgata |
7126526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 7486061 - 7485988
Alignment:
| Q |
15 |
aacatagtagattattatggatgataaaaaacaacataa--aattctttataattataaaacaaataggagaaa |
86 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||| ||| |||||||||| ||||||||||| |||||| |
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| T |
7486061 |
aacatagtagattattatggatgacgagcaacaacataaataatactttataattgtaaaacaaatatgagaaa |
7485988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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