View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_61 (Length: 250)
Name: NF3605_low_61
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_61 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 2365488 - 2365720
Alignment:
| Q |
18 |
gttatcatcatggtcatgggaagtttaagcatggaaaatttggcaaacatggaaaattcggcaagcatggaaaattcggcaagggatggaagtgatgcag |
117 |
Q |
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| T |
2365488 |
gttatcatcatggtcatgggaagtttaagcatgggaaatttggcaaacatggaaaattcggcaagcatggaaaattcggcaagggatggaagtgatgcag |
2365587 |
T |
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| Q |
118 |
aggcgaatatattaaatatgcaactttgagcatgatcatcaatgctgaatttttagatgaataatgtatgctaattttatcttgataataataatgtatg |
217 |
Q |
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| T |
2365588 |
aggcgaatatattaaatatccaactttgagcatgatcatcaatgctgaattattagatgaataatgtatgctaattttatcttgataataataatgtatg |
2365687 |
T |
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| Q |
218 |
ctaattgttattagcaacatactaagtttcaat |
250 |
Q |
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| T |
2365688 |
ctaattgttattagcaacatactaagtttcaat |
2365720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 2369008 - 2369130
Alignment:
| Q |
80 |
aagcatggaaaattcggcaagggatggaagtgatgcagaggcgaatatattaa------atatgcaactttgagcatgatcatcaatgctgaatttttag |
173 |
Q |
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| T |
2369008 |
aagcatggaaaatttggcaaacgatggaagtgatacaggggcaaatatattaagtatatatatgcaactttgagcatgatcatggatgctaaatttttag |
2369107 |
T |
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| Q |
174 |
atgaata---atgtatgctaatt |
193 |
Q |
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| T |
2369108 |
attaataataatgtatgctaatt |
2369130 |
T |
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