View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3605_low_63 (Length: 250)
Name: NF3605_low_63
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_63 |
 | |
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| [»] chr5 (13 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0627 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 1600939 - 1601174
Alignment:
| Q |
15 |
aatggacagttgttgtaatgtcagttatttgaacgttcttagttgctaagtagtaaattgtttcttaagtgtattccatcccctgcaatttgaagtttta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
1600939 |
aatggacagttgttgtaatgtcagttatttgaacgttcttagttgctaagtagtaaattgtttcttaagtgtattccatcccctgcaatttgcagtttta |
1601038 |
T |
|
| Q |
115 |
gctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaacggaaggtctatctctgtctca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1601039 |
gctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaacggaaggtctatctctgtctca |
1601138 |
T |
|
| Q |
215 |
actgactgtttaagacttagaaactacatgttttcc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1601139 |
actgactgtttaagacttagaaactacatgttttcc |
1601174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 8528331 - 8528109
Alignment:
| Q |
11 |
aatgaatggacagttgttgtaatgtcagttatttgaacgttctt-agttgctaagtagtaaattgtttcttaagtgtattccatcccctgcaatttgaag |
109 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| | ||||| |||||||| ||||||||| ||||||| || | |||||||||||||||||| || |
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|
| T |
8528331 |
aatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttgcag |
8528232 |
T |
|
| Q |
110 |
ttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaacggaaggtctatctctg |
209 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| | ||| |||||| |
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|
| T |
8528231 |
ttttagctactattacttaaccaatattccccaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctg |
8528132 |
T |
|
| Q |
210 |
tctcaactgactgtttaagactt |
232 |
Q |
| |
|
||||||| || ||||| |||||| |
|
|
| T |
8528131 |
tctcaacagattgtttgagactt |
8528109 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 8534896 - 8534708
Alignment:
| Q |
11 |
aatgaatggacagttgttgtaatgtcagttatttgaacgttctt-agttgctaagtagtaaattgtttcttaagtgtattccatcccctgcaatttgaag |
109 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | ||||| |||||||| ||||||||| ||||||| || | ||||||||||| |||||| || |
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|
| T |
8534896 |
aatgaatggacagttgttgtaatctcagttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgtaatttgcag |
8534797 |
T |
|
| Q |
110 |
ttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaacggaag |
198 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8534796 |
ttttagctactattacttaaccaatattccccaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaaaggaag |
8534708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 8640871 - 8640694
Alignment:
| Q |
15 |
aatggacagttgttgtaatgtcagttatttgaacgttctta-gttgctaagtagtaaattgtttcttaagtgtattccatcccctgcaatttgaagtttt |
113 |
Q |
| |
|
|||||| |||||||||||| |||||| | || | | |||| |||| |||||||||||| |||| | ||| |||||||||| ||||||||| |||||| |
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|
| T |
8640871 |
aatggatagttgttgtaatttcagttttatggatctgcttaagttgttaagtagtaaat-gtttttcaagactattccatcctctgcaattttcagtttt |
8640773 |
T |
|
| Q |
114 |
agctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
8640772 |
agctaatattacttaaccattgttccctaatattgttttaatttatataggtgtgcaaagtttaaattgggagaagaaa |
8640694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 9002651 - 9002563
Alignment:
| Q |
104 |
ttgaagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9002651 |
ttgaagttttagctaatattatttaaccgttgttcctgaatattgttgtaatttatataggtgtgcaaagtttaaattgagggaagaaa |
9002563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 9075116 - 9075241
Alignment:
| Q |
108 |
agttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaacggaaggtctatctc |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | |||| | ||| ||| |||||||||||||||||||||||||||||||||| ||| | ||| |||| |
|
|
| T |
9075116 |
agttttagctaatattacttgaccattattctctaataccggtttgattattataggtgtgcaaagtttaaattgcgggaagaaagggacgttctttctc |
9075215 |
T |
|
| Q |
208 |
tgtctcaactgactgtttaagactta |
233 |
Q |
| |
|
||| |||| || ||||| ||||||| |
|
|
| T |
9075216 |
tgtttcaagagattgtttgagactta |
9075241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 8548785 - 8548835
Alignment:
| Q |
142 |
aatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| | |||||||| |
|
|
| T |
8548785 |
aatattgttttaatttatataggtgtgtaaagtttaaatttcaggaagaaa |
8548835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 8677620 - 8677560
Alignment:
| Q |
132 |
attattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||||| || ||||||||||||||| |
|
|
| T |
8677620 |
attattcgctaatattgttttaattgatataggtgtgcaaatgttgaattgcgggaagaaa |
8677560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 8550856 - 8550906
Alignment:
| Q |
142 |
aatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
8550856 |
aatattgttataatttatttaggtgtgcaaagtataaattgcaggaagaaa |
8550906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 8636396 - 8636303
Alignment:
| Q |
132 |
attattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaacggaaggtctatctctgtctcaactgactgttt |
225 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||||||| || |||||| |||||||| |||| ||| || ||||||||| ||||||| |
|
|
| T |
8636396 |
attattccctcatattgttttgattgatataggtgtgcaaatgttgaattgccggaagaaaatgaagttctttccttgtctcaacaaactgttt |
8636303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 8640504 - 8640467
Alignment:
| Q |
155 |
tttatataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
8640504 |
tttatataggtgtgcaaaatttaaattgcgtgaagaaa |
8640467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 9002333 - 9002300
Alignment:
| Q |
159 |
tataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
9002333 |
tataggtgtgcaaagtttaaattgcgtgaagaaa |
9002300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 8643857 - 8643817
Alignment:
| Q |
132 |
attattcccaaatattgttttaatttatataggtgtgcaaa |
172 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
8643857 |
attattccttaatattgttttaattgatataggtgtgcaaa |
8643817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 48362398 - 48362636
Alignment:
| Q |
11 |
aatgaatggacagttgttgtaatgtcagttatttgaacgttcttagttgctaagtagtaaattgtttcttaagtgtattccatcccctgcaatttgaagt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || |||||||||| ||| |||||||| |||| | || |||||||||| |||||||||| ||| |
|
|
| T |
48362398 |
aatgaatgggaagttgttgtaatgtcagttatttggaccttcttagttggtaattagtaaatagttt-tcgagactattccatcctctgcaatttgcagt |
48362496 |
T |
|
| Q |
111 |
tttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaacggaaggtctatctctgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
48362497 |
tttagctaatattacttaaccattattcctgaatattggtttaatttatataggtgtgcaaagtttaaattgcaggaagaaaaggaaggtatatctctgt |
48362596 |
T |
|
| Q |
211 |
ctcaactgactgtttaagacttagaaactacatgttttcc |
250 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
48362597 |
ctcaacagattgtttgagacttagaaactacatgttttcc |
48362636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 35777608 - 35777552
Alignment:
| Q |
136 |
ttcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
||||| ||||||||| | || |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
35777608 |
ttccctaatattgttgtcatgtatataggtgtgcaaagtataaattgtgggaagaaa |
35777552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 9442492 - 9442287
Alignment:
| Q |
11 |
aatgaatggacagttgttgtaatgtcagttatttgaacgttctt-agttgctaagtagtaaattgtttcttaagtgtattccatcccctgcaatttgaag |
109 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| | ||||| |||||||| ||||||||| ||||||| || | |||||||||||||||||| || |
|
|
| T |
9442492 |
aatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctatgtagtaaatagtttcttgaggctgatccatcccctgcaatttgcag |
9442393 |
T |
|
| Q |
110 |
ttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaacggaaggtctatctctg |
209 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| | ||| |||||| |
|
|
| T |
9442392 |
ttttagctactattaattaaccaatattcctcaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctg |
9442293 |
T |
|
| Q |
210 |
tctcaa |
215 |
Q |
| |
|
|||||| |
|
|
| T |
9442292 |
tctcaa |
9442287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 16715768 - 16715636
Alignment:
| Q |
62 |
aagtagtaaattgtttcttaagtgtattccatcccc--tgcaatttgaagttttagctaatattacttaaccattattcccaaatattgttttaatttat |
159 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||| | ||| ||| | ||||||||||||||||||| ||| ||||| ||||||||||| | ||| |
|
|
| T |
16715768 |
aagtagtaaattgtttcttgagcttattccaccccccctacaaattgcaattttagctaatattacttagtcatcgttccctaatattgttttcttctat |
16715669 |
T |
|
| Q |
160 |
ataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
16715668 |
ataggtgtggaaagtttaaattgcgggaagaaa |
16715636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 5130120 - 5130082
Alignment:
| Q |
154 |
atttatataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5130120 |
atttatacaggtgtgcaaagtttaaattgcgggaagaaa |
5130082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 26324320 - 26324360
Alignment:
| Q |
177 |
aaattgcgggaagaaacggaaggtctatctctgtctcaact |
217 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
26324320 |
aaattgcgggaagaaaaggaagttctttctctgtctcaact |
26324360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 3849 - 3775
Alignment:
| Q |
118 |
aatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaa |
192 |
Q |
| |
|
||||||||||| ||| ||||| |||| |||||| ||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
3849 |
aatattacttagtcatcgttccctaatactgttttctattatataggtgtggaaagtttaaattgcgtgaagaaa |
3775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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