View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_64 (Length: 249)
Name: NF3605_low_64
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_64 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 42206221 - 42205974
Alignment:
| Q |
11 |
cagagaaatatgttataatggatatgatttttaaattggctatccttgtcacaaaatatatacaattttaattctagattgttaaaaaggagtttttgcc |
110 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
42206221 |
cagagaaatgtgttataatggatatgatttttaaattggctatc-ttgtcacaaaatatatacaattttaattctagattgttaaaaaggag-tcttgcc |
42206124 |
T |
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| Q |
111 |
gtaaaacaattttatttactttaacaccgaatttta-----------cggtagtagtggtgtgatattgccatttcaacttatcgtgatggttcgtgaaa |
199 |
Q |
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| T |
42206123 |
gtaaaacaattttatttactttaacaccggattttacgaaatcatcccggtagtagtggtgtgatattgccatttcaacttatcgttatggttcgtgaaa |
42206024 |
T |
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| Q |
200 |
gtccctttcgctgtactttttgaaaggaataacgtggattattttttact |
249 |
Q |
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| T |
42206023 |
gtccctttcgctgtactttttgaaaggaataacgtggattattttttact |
42205974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 42215089 - 42214842
Alignment:
| Q |
11 |
cagagaaatatgttataatggatatgatttttaaattggctatccttgtcacaaaatatatacaattttaattctagattgttaaaaaggagtttttgcc |
110 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
42215089 |
cagagaaatgtgttataatggatatgatttttaaattggctatc-ttgtcacaaaatatatacaattttaattctagattgttaaaaaggag-tcttgcc |
42214992 |
T |
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| Q |
111 |
gtaaaacaattttatttactttaacaccgaatttta-----------cggtagtagtggtgtgatattgccatttcaacttatcgtgatggttcgtgaaa |
199 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42214991 |
gtaaaacaattttatttactttaacaccggattttacgaaatcatcccggtagtagtggtgtgatattgccatttcaacttatcgttatggttcgtgaaa |
42214892 |
T |
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| Q |
200 |
gtccctttcgctgtactttttgaaaggaataacgtggattattttttact |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214891 |
gtccctttcgctgtactttttgaaaggaataacgtggattattttttact |
42214842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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