View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_65 (Length: 249)
Name: NF3605_low_65
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4730144 - 4729900
Alignment:
| Q |
1 |
tatgtaaattatcatgcagg--gagctcagactgttaaagtgcagtccactgaagttcctgagatacaggcagataaactgaaagaagttacagataact |
98 |
Q |
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| T |
4730144 |
tatgtaaattatcatgcaggccgagttcagactgttaaagtgcagcccactgaagttcctgagatacaggcagataaactgaaagaagttacagatgatt |
4730045 |
T |
|
| Q |
99 |
ttggacaagattctctgattggagagggatcctatggaagataatattatggagttcttgaaagtgtgaaggctacagcaatcaagaagttagatgccag |
198 |
Q |
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| T |
4730044 |
tcggacaagattctctgattggagagggatcctatggaagataatattatggagttcttgaaagtgtgaaggctacagcaatcaagaagttagatgccag |
4729945 |
T |
|
| Q |
199 |
taaacagctcgatgaggaattctgcagcaat-aatcgcctatgct |
242 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
4729944 |
taaacagctcgatgaggaattctgcagcaatcaatcgcctgtgct |
4729900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 4754063 - 4753839
Alignment:
| Q |
6 |
aaattatcatgcagggagctcag-actgttaaagtgcagtccactgaa-gttcctgagatacaggcagataaactgaaagaagttacagataactttgga |
103 |
Q |
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|||||||||||||| |||||||| ||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4754063 |
aaattatcatgcagtgagctcaggactgttaaagtgcgtcccattgaaagttcctgagatacaggcagatgaactgaaagaagttacagataactttggt |
4753964 |
T |
|
| Q |
104 |
caagattctctgattggagagggatcctatggaagataatattatggagttcttgaaagtgtgaaggctacagcaatcaagaagttagatgccagtaaac |
203 |
Q |
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| T |
4753963 |
caagattctctgattggagagggatcctatggaagagtttatta-ggagttcttacaagtgggcaggctacaacaataaagaagttagatgccagtaaac |
4753865 |
T |
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| Q |
204 |
agctcgatgaggaattctgcagcaat |
229 |
Q |
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| T |
4753864 |
agctcgacgaggaattttgcagcaat |
4753839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 4740900 - 4740741
Alignment:
| Q |
70 |
agataaactgaaagaagttacagataactttggacaagattctctgattggagagggatcctatggaagataatattatggagttcttgaaagtgtgaag |
169 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| |||||||| |||||||||||||||| ||||| | | |
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| T |
4740900 |
agattaactgaaagaagttacagataactttggacaagattctctggttagagatggatcctctggaagattatattatggagttcttaaaagtaggtcg |
4740801 |
T |
|
| Q |
170 |
gctacagcaatcaagaagttagatgccagtaaacagctcgatgaggaattctgcagcaat |
229 |
Q |
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| T |
4740800 |
ggtacgtcaatcaagaagttagatgccagtaaacagctcaatgaggaattctgcagcaat |
4740741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 38593571 - 38593366
Alignment:
| Q |
16 |
gcagggagctcagactgttaaagtgcagtccactgaagttcctgagatacaggcagataaactgaaagaagttacagataactttggacaagattctctg |
115 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
38593571 |
gcagggagctcagactgttaaagtgcagcccattgaagttcctgagatacaggcagatgaactgaaagaagttacggataactttggacaagattctctt |
38593472 |
T |
|
| Q |
116 |
attggagagggatcctatggaagataatattatggagttcttgaaagtgtgaaggctacagcaatcaagaagttagatgccagtaaacagctcgatgagg |
215 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||| ||||||| |
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| T |
38593471 |
attggagagggatcctatggaagagtatattacggagttcttaaaagtggacaggctgcggcaatcaagaagttagatgccagtaaacagcctgatgagg |
38593372 |
T |
|
| Q |
216 |
aattct |
221 |
Q |
| |
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|||||| |
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|
| T |
38593371 |
aattct |
38593366 |
T |
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