View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_66 (Length: 247)
Name: NF3605_low_66
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_66 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 53425490 - 53425253
Alignment:
| Q |
10 |
aatatcccaacttaccaaaaaccccatccctgacatgtaatgtttaaaagggtccatgcttccacacggtatcacaaaaccatagtataaatcctccttc |
109 |
Q |
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| T |
53425490 |
aatatcccaacttaccaaaaaccccatccctgacatgtaatgtttaaaagggtccatgcttccacacggtatcacaaaaccatagtataaatcctccttc |
53425391 |
T |
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| Q |
110 |
ggtaacggttttaacgattttaccaaactgtttaacctcacgtaggtgtcatcatctgctttcataacgtagtggtatggagggtaatctggtccattca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425390 |
ggtaacggttttaacgattttaccaaactgtttaacctcacgtaggtatcatcatctgctttcataacgtagtggtatggagggtaatctggtccattca |
53425291 |
T |
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| Q |
210 |
ctgtttcattgaaaatctctggtaaacttgtgaagaac |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
53425290 |
ctgtttcattgaaaatctctggtaaacttgtgaagaac |
53425253 |
T |
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