View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_67 (Length: 246)
Name: NF3605_low_67
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 7484618 - 7484395
Alignment:
| Q |
4 |
taatatattcaaaacaatttatttaccttattgtagaacctattcatcttccacgtaatctccat-----gccgagacggcaccttcgggcaatcataga |
98 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||| || |||||| |||| || ||||||||| ||| ||||||||| | | || |
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| T |
7484618 |
taatatattcaaaacaatttatttaccttgttgtagaacgtattgatgttccac---atctacacatgccgccgagacgtcacattcgggcaacctttga |
7484522 |
T |
|
| Q |
99 |
tgtctaacacttgcagtgatgttgcccattcaggtatagatgcaagattgacacaatatacgatttttagagtctgtaaagtggtaatgtgttgaagccc |
198 |
Q |
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| ||||| ||||| |||||| || |||||||||||||||||| |||||| |||||| | |||| ||||||| ||||||||||||||||| |||||||| |
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| T |
7484521 |
tatctaatacttgtagtgattttacccattcaggtatagatgtaagattctcacaatttctgattcttagagtttgtaaagtggtaatgtgctgaagccc |
7484422 |
T |
|
| Q |
199 |
ctcaggtatatatttcatttttgggat |
225 |
Q |
| |
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|||||| | |||||||||||||||||| |
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|
| T |
7484421 |
ctcaggcaaatatttcatttttgggat |
7484395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 7716024 - 7716184
Alignment:
| Q |
66 |
catgccgagacggcaccttcgggcaatcatagatgtctaacacttgcagtgatgttgcccattcaggtatagatgcaagattgacacaatatacgatttt |
165 |
Q |
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|||||||||| | ||| ||||||||| | | ||| || || |||||||||||||||||||||||||||||||||| |||||| ||||| | | |||| | |
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| T |
7716024 |
catgccgagatgtcacattcgggcaacctttgatatcaaatacttgcagtgatgttgcccattcaggtatagatgtaagattcacacagtctgtgattct |
7716123 |
T |
|
| Q |
166 |
tagagtctgtaaagtggtaatgtgttgaagcccctcaggtatatatttcatttttgggatt |
226 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
7716124 |
tagaatctgtaaagtggtaatgtgctgaagcccctcaggtaaatatttcatttttgggatt |
7716184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 7522594 - 7522451
Alignment:
| Q |
83 |
ttcgggcaatcatagatgtctaacacttgcagtgatgttgcccattcaggtatagatgcaagattgacacaatatacgatttttagagtctgtaaagtgg |
182 |
Q |
| |
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||||||||||| | ||||| || ||||||||||||||| |||||||||||||||||| |||||| |||||| || || |||||||||||||||||| |
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| T |
7522594 |
ttcgggcaatctttgatgtaaaatacttgcagtgatgttacccattcaggtatagatgtaagattcacacaacgtataatgcttagagtctgtaaagtgg |
7522495 |
T |
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| Q |
183 |
taatgtgttgaagcccctcaggtatatatttcatttttgggatt |
226 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
7522494 |
taatgtgttgaagcccctctggtaaatatttcatttttgggatt |
7522451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 7496940 - 7496793
Alignment:
| Q |
79 |
caccttcgggcaatcatagatgtctaacacttgcagtgatgttgcccattcaggtatagatgcaagattgacacaatatacgatttttagagtctgtaaa |
178 |
Q |
| |
|
||||||||||||||| | ||||| || |||||||||||| || |||||||||||||||||| |||||| |||||| ||| ||||||| |||||| |
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| T |
7496940 |
caccttcgggcaatcttcgatgttaaatacttgcagtgattttacccattcaggtatagatgtaagattctcacaattccatattcttagagtttgtaaa |
7496841 |
T |
|
| Q |
179 |
gtggtaatgtgttgaagcccctcaggtatatatttcatttttgggatt |
226 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7496840 |
gtggtaatgtgttgaagcccctcaggtaaatatttcatttttgggatt |
7496793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 7719866 - 7720015
Alignment:
| Q |
79 |
caccttcgggcaatcatagatgtctaacacttgcagtgatgttgcccattcaggtatagatgcaagattgacacaatatacgatttttagagtctgtaaa |
178 |
Q |
| |
|
||||||||||||||| | ||| || || |||||||||||| || |||||||||||||||||| |||||| || ||| | |||| ||||||| |||||| |
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| T |
7719866 |
caccttcgggcaatctttgatatcaaatacttgcagtgattttacccattcaggtatagatgtaagattctcaaaatttctgattcttagagtttgtaaa |
7719965 |
T |
|
| Q |
179 |
gtggtaatgtgttgaagcccctcaggtatatatttcatttttgggattcc |
228 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||||||| |
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| T |
7719966 |
gtggtaatgtgctgaagcccctcaggcaaatatttcatttttgggattcc |
7720015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 7503130 - 7502983
Alignment:
| Q |
79 |
caccttcgggcaatcatagatgtctaacacttgcagtgatgttgcccattcaggtatagatgcaagattgacacaatatacgatttttagagtctgtaaa |
178 |
Q |
| |
|
||||||||||||||| | ||| || || |||||||||||| || |||||||||||||||||| |||||| |||||| | |||| ||||||| |||||| |
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| T |
7503130 |
caccttcgggcaatctttgatatcaaatacttgcagtgattttacccattcaggtatagatgtaagattctcacaatttctgattcttagagtttgtaaa |
7503031 |
T |
|
| Q |
179 |
gtggtaatgtgttgaagcccctcaggtatatatttcatttttgggatt |
226 |
Q |
| |
|
||||||||||| |||||||||| ||||| || |||||||||||||||| |
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| T |
7503030 |
gtggtaatgtgctgaagccccttaggtaaatttttcatttttgggatt |
7502983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 226
Target Start/End: Original strand, 7126622 - 7126747
Alignment:
| Q |
101 |
tctaacacttgcagtgatgttgcccattcaggtatagatgcaagattgacacaatatacgatttttagagtctgtaaagtggtaatgtgttgaagcccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| ||| | ||| | ||||||||||||||||| ||||| |||| |
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| T |
7126622 |
tctaacacttgcagtgatgttgcccattcaggtatagatgtaagattcttacaatttactattctcagaatttgtaaagtggtaatgtgctgaagtccct |
7126721 |
T |
|
| Q |
201 |
caggtatatatttcatttttgggatt |
226 |
Q |
| |
|
|||| | ||||||||||||||||||| |
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|
| T |
7126722 |
caggcaaatatttcatttttgggatt |
7126747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 7530648 - 7530520
Alignment:
| Q |
97 |
gatgtctaacacttgcagtgatgttgcccattcaggtatagatgcaagattgacacaatatacgatttttagagtctgtaaagtggtaatgtgttgaagc |
196 |
Q |
| |
|
|||||| || |||||||||||| || |||||||||||||||||| |||||| ||||| || ||||||| |||||||||||||||||||||||| |
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| T |
7530648 |
gatgtcaaatacttgcagtgattttacccattcaggtatagatgtaagattctcacaactccatatccttagagtttgtaaagtggtaatgtgttgaagc |
7530549 |
T |
|
| Q |
197 |
ccctcaggtatatatttcatttttgggat |
225 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
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|
| T |
7530548 |
ccctcaggtaaatatttcatttttgggat |
7530520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 10477676 - 10477799
Alignment:
| Q |
107 |
acttgcagtgatgttgcccattcaggtatagatgcaagattgacaca----atatacgatttttagagtctgtaaagtggtaatgtgttgaagcccctca |
202 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| |||| ||||||| || || |||| ||||||||||| ||| |||||||||||||||||||| |
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| T |
10477676 |
acttgcagtgttgttacccattcaggtatagatgtaagactgacacacacaatgtatgattcttagagtctgtggagttctaatgtgttgaagcccctca |
10477775 |
T |
|
| Q |
203 |
ggtatatatttcatttttgggatt |
226 |
Q |
| |
|
| | ||||||||||||||||||| |
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|
| T |
10477776 |
gccaaatatttcatttttgggatt |
10477799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7496982 - 7496947
Alignment:
| Q |
1 |
tattaatatattcaaaacaatttatttaccttattg |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7496982 |
tattaatatattcaaaacaatttatttaccttattg |
7496947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7522640 - 7522605
Alignment:
| Q |
1 |
tattaatatattcaaaacaatttatttaccttattg |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7522640 |
tattaatatattcaaaacaatttatttaccttattg |
7522605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7530697 - 7530662
Alignment:
| Q |
1 |
tattaatatattcaaaacaatttatttaccttattg |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7530697 |
tattaatatattcaaaacaatttatttaccttattg |
7530662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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