View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_68 (Length: 246)
Name: NF3605_low_68
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 6397391 - 6397470
Alignment:
| Q |
148 |
gattttatagaaaacagctaacacttaaaaacagataacagctaacactcgtttctttcatcaagcagctatccagaggc |
227 |
Q |
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| T |
6397391 |
gattttatagaaaacagctaacacttaaaaacagataacagctaacactcgcttctttcatcaagcagctatccagaggc |
6397470 |
T |
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Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6397244 - 6397305
Alignment:
| Q |
1 |
aacaaacataatagtccattataattattacatattttttccaatttattttgtaatatttg |
62 |
Q |
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| T |
6397244 |
aacaaacataatagtccattataattattacatattttttccaatttattttgtaatatttg |
6397305 |
T |
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