View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3605_low_73 (Length: 236)

Name: NF3605_low_73
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3605_low_73
NF3605_low_73
[»] chr7 (6 HSPs)
chr7 (14-222)||(27933450-27933661)
chr7 (73-175)||(10201393-10201495)
chr7 (53-173)||(4613722-4613842)
chr7 (42-97)||(34265008-34265063)
chr7 (1-31)||(27933674-27933704)
chr7 (91-173)||(34265090-34265172)
[»] chr8 (3 HSPs)
chr8 (42-189)||(41146145-41146292)
chr8 (22-131)||(39396859-39396968)
chr8 (42-173)||(11246957-11247088)
[»] chr4 (2 HSPs)
chr4 (42-194)||(41921938-41922090)
chr4 (29-131)||(49378839-49378941)
[»] chr3 (6 HSPs)
chr3 (20-179)||(621976-622135)
chr3 (22-175)||(48847608-48847762)
chr3 (40-179)||(45675682-45675820)
chr3 (73-195)||(16118534-16118656)
chr3 (28-142)||(19322377-19322491)
chr3 (42-132)||(36700176-36700266)
[»] chr6 (3 HSPs)
chr6 (42-194)||(32312818-32312970)
chr6 (42-192)||(5642568-5642717)
chr6 (114-179)||(6368752-6368817)
[»] chr1 (6 HSPs)
chr1 (42-179)||(43292733-43292870)
chr1 (28-179)||(9607572-9607724)
chr1 (23-179)||(2990551-2990706)
chr1 (92-182)||(45847726-45847816)
chr1 (85-182)||(35998146-35998243)
chr1 (42-192)||(47852291-47852441)
[»] scaffold0095 (1 HSPs)
scaffold0095 (22-131)||(37833-37942)
[»] chr5 (4 HSPs)
chr5 (42-171)||(12429743-12429873)
chr5 (50-197)||(38153342-38153489)
chr5 (84-174)||(17759332-17759422)
chr5 (54-142)||(8959344-8959432)
[»] scaffold0065 (1 HSPs)
scaffold0065 (42-179)||(49476-49613)
[»] chr2 (1 HSPs)
chr2 (89-132)||(6807122-6807165)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 27933661 - 27933450
Alignment:
Q  14 aaggacttagtgtttgtttgatacaacttttgtaaaacggagtttgataaaaa---ccatggcaaaaaaccacattagcgtagaagctaatatttagagc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||| ||||||||||||||||||| ||||||||||    
T  27933661 aaggacttagtgtttgtttgatacaacttttgtaaaacggagtttgataaaaaaaactatggcaaaaaatcacattagcgtagaagctagtatttagagc 27933562  T
Q  111 ttctgaaaatcacggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacgggaaatcatacatacgcttagccggattgcctccct 210  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27933561 ttctgaaaatcacggtaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacgggaaatcacacatacgcttagccggattgcctccct 27933462  T
Q  211 cgtattgaatgt 222  Q
    ||||||||||||    
T  27933461 cgtattgaatgt 27933450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 10201393 - 10201495
Alignment:
Q  73 caaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaa 172  Q
    ||||||| ||| ||||||||||||||| ||||| |||||| || ||||||| ||||||||| ||| |||| |||| ||||||| ||||||||||||||||    
T  10201393 caaaaaatcacgttagcgtagaagctagtatttggagcttttggaaatcacagcaaaaatacatcagaaagcgtgcaaacgtgattttgtgtgttgcaaa 10201492  T
Q  173 cgg 175  Q
    |||    
T  10201493 cgg 10201495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 4613842 - 4613722
Alignment:
Q  53 gagtttgataaaaaccatggcaaaaaac-cacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaaaacgtgtaaa 151  Q
    |||||||||||||| ||||| ||||||  ||| |||||  ||||| ||||||| | ||||||| ||||||||||||||||  || ||||||||||  |||    
T  4613842 gagtttgataaaaatcatggtaaaaaaatcacgttagcaaagaagttaatattaa-agcttctaaaaatcacggcaaaaacctaacggaaaacgtacaaa 4613744  T
Q  152 cgtgcttttgtgtgttgcaaac 173  Q
    | | ||||||||||||||||||    
T  4613743 catacttttgtgtgttgcaaac 4613722  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 34265008 - 34265063
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagc 97  Q
    ||||||||||||||||||||||| |  | ||||||||||||| ||||| |||||||    
T  34265008 tttgtaaaacggagtttgataaagattacggcaaaaaaccacgttagcatagaagc 34265063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 27933704 - 27933674
Alignment:
Q  1 agcacatattttcaaggacttagtgtttgtt 31  Q
    |||||||||||||||||||||||||||||||    
T  27933704 agcacatattttcaaggacttagtgtttgtt 27933674  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 34265090 - 34265172
Alignment:
Q  91 tagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaac 173  Q
    ||||||||| ||| || |||||||||||||||| | ||||||  |||  ||| ||| ||||||||||||||| | ||||||||    
T  34265090 tagaagctagtatctaaagcttctgaaaatcacaggaaaaatgcatcaaaaatcgtataaacgtgcttttgtatattgcaaac 34265172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 189
Target Start/End: Original strand, 41146145 - 41146292
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaa 141  Q
    |||| |||||||||||||||| ||| || ||||||||||||| ||| ||||||| ||| ||||| |||||| ||| ||||||||||||||| ||||||||    
T  41146145 tttgcaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacgtagaaactagtatttggagcttatgagaatcacggcaaaaatgtatcggaa 41146244  T
Q  142 aacgtgtaaacgtgcttttgtgtgttgcaaacgggaaatcatacatac 189  Q
    | |||| ||   |||||||||||||||||||||||||| || ||||||    
T  41146245 agcgtgcaagtatgcttttgtgtgttgcaaacgggaaaccaaacatac 41146292  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 39396968 - 39396859
Alignment:
Q  22 agtgtttgtttgatacaacttttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatc 121  Q
    ||||||||||| ||||| | |||| ||||| | ||| |||  ||| || ||||||||||||| |||||  |||||||| ||||| |||||||||||||||    
T  39396968 agtgtttgtttaatacagcgtttgcaaaacagtgttcgatggaaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatc 39396869  T
Q  122 acggcaaaaa 131  Q
    ||||||||||    
T  39396868 acggcaaaaa 39396859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 11247088 - 11246957
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaa 141  Q
    |||| |||||| ||||||||  | | || |||||||||| || |||||| ||||||||||||||  |||||||||||||||||  ||||| | || || |    
T  11247088 tttgcaaaacgaagtttgatggagatcacggcaaaaaactactttagcgcagaagctaatatttgaagcttctgaaaatcacgataaaaacacattggga 11246989  T
Q  142 aacgtgtaaacgtgcttttgtgtgttgcaaac 173  Q
    | |||| ||| ||| |||||||||||||||||    
T  11246988 atcgtgcaaaagtgtttttgtgtgttgcaaac 11246957  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 41922090 - 41921938
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaa 141  Q
    |||| |||||||||||||||| ||| || ||||||||||||| ||| | ||||||||| ||||| |||||| ||| |||||||||||||||  || ||||    
T  41922090 tttgaaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacctagaagctagtatttggagcttatgagaatcacggcaaaaatgcattggaa 41921991  T
Q  142 aacgtgtaaacgtgcttttgtgtgttgcaaacgggaaatcatacatacgctta 194  Q
    |  ||| ||||||| ||||||||||||||||  |||||||| |||||| ||||    
T  41921990 agtgtgcaaacgtgtttttgtgtgttgcaaagaggaaatcaaacatacactta 41921938  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 49378941 - 49378839
Alignment:
Q  29 gtttgatacaacttttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaa 128  Q
    ||||| ||||||||||| |||||||||||||||||||| || || |||||||||| || ||| ||||||||||||||||||||||||||||||| || ||    
T  49378941 gtttggtacaacttttgcaaaacggagtttgataaaaatcacggtaaaaaaccacgttggcgaagaagctaatatttagagcttctgaaaatcaaggtaa 49378842  T
Q  129 aaa 131  Q
    |||    
T  49378841 aaa 49378839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 621976 - 622135
Alignment:
Q  20 ttagtgtttgtttgatacaacttttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaa 119  Q
    ||||||||||||||  ||||| |||| ||||  ||||||||| |||| ||  |||||||||||| ||| ||||||||||| ||||| |||||| | ||||    
T  621976 ttagtgtttgtttggcacaacgtttgcaaaatagagtttgatgaaaatcacagcaaaaaaccacgttaacgtagaagctagtatttggagcttttaaaaa 622075  T
Q  120 tcacggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacgggaaa 179  Q
    ||||||||||||   |||| | ||| || ||| |||||||||| |||||||||| |||||    
T  622076 tcacggcaaaaacgcatcgaataacatgcaaatgtgcttttgtatgttgcaaacaggaaa 622135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 48847762 - 48847608
Alignment:
Q  22 agtgtttgtttgatacaacttttgtaaaacggagtttga-taaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaat 120  Q
    ||||| |||||| |||| | |||| ||||| |||||||| |  ||| || ||||||||||||| ||||||  |||| || |||||  ||||| |||||||    
T  48847762 agtgtctgtttggtacagcgtttgaaaaacagagtttgaatggaaatcacggcaaaaaaccacgttagcgaggaagttagtatttgaagcttgtgaaaat 48847663  T
Q  121 cacggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacgg 175  Q
    ||||||||||||  ||||||||||||| |||| ||||||||| ||||||||||||    
T  48847662 cacggcaaaaatgcatcggaaaacgtgcaaacatgcttttgtatgttgcaaacgg 48847608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 179
Target Start/End: Complemental strand, 45675820 - 45675682
Alignment:
Q  40 cttttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcgg 139  Q
    |||||| |||||||||||||||| ||| || || |||||||||| |||||||||||| || |||||  || |||||| ||||||| | |||| | ||||     
T  45675820 cttttgaaaaacggagtttgatagaaatcacggtaaaaaaccacgttagcgtagaagttagtatttgaagtttctgagaatcacgac-aaaacaaatcga 45675722  T
Q  140 aaaacgtgtaaacgtgcttttgtgtgttgcaaacgggaaa 179  Q
    |||  ||  ||||||| | |||||||||||||||||||||    
T  45675721 aaagtgtacaaacgtgttattgtgtgttgcaaacgggaaa 45675682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 16118534 - 16118656
Alignment:
Q  73 caaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaa 172  Q
    ||||||||||| ||||||||||||||| ||||| |||||| || ||||||   |||||||   ||  |||||||| |||||| ||||||||||||| |||    
T  16118534 caaaaaaccacgttagcgtagaagctagtatttggagcttttggaaatcataccaaaaatgcgtcacaaaacgtgcaaacgtacttttgtgtgttgtaaa 16118633  T
Q  173 cgggaaatcatacatacgcttag 195  Q
    ||||||  || | ||||||||||    
T  16118634 cgggaagccagatatacgcttag 16118656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 19322491 - 19322377
Alignment:
Q  28 tgtttgatacaacttttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggca 127  Q
    |||||| |||| | ||||||||| ||||| ||||  ||| |||||||||||||||| |||||| ||||| || ||||| ||| || || |||||| ||||    
T  19322491 tgtttggtacatcctttgtaaaatggagtatgatggaaatcatggcaaaaaaccacgttagcgaagaagttagtatttggagtttatggaaatcatggca 19322392  T
Q  128 aaaatatatcggaaa 142  Q
    ||||| |||| ||||    
T  19322391 aaaatgtatcagaaa 19322377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 36700266 - 36700176
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaat 132  Q
    |||| ||||||||||||||||||||   |||||||||||||| || ||| |||| ||| |||||  | ||| ||||||||| | |||||||    
T  36700266 tttgcaaaacggagtttgataaaaattgtggcaaaaaaccacgttggcgaagaaactagtatttgaaacttttgaaaatcatgacaaaaat 36700176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 32312818 - 32312970
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaa 141  Q
    |||| |||||||| ||||||  ||| || ||||||||||||  ||||||||||||||| ||| | |||||| || ||||||||||||||| | || ||||    
T  32312818 tttgcaaaacggactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctggagcttttggaaatcacggcaaaaacacattggaa 32312917  T
Q  142 aacgtgtaaacgtgcttttgtgtgttgcaaacgggaaatcatacatacgctta 194  Q
    | | || |||| ||||||||| |||||| ||||||||| || ||| |||||||    
T  32312918 agcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgctta 32312970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 5642568 - 5642717
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaa 141  Q
    ||||||||||||||||| || |||| || | |||||| | ||  ||||||||||| || |||||  | |||||| |||||| || |||||||||| || |    
T  5642568 tttgtaaaacggagtttaatgaaaatcacgacaaaaatc-acgctagcgtagaagttagtatttgaaacttctggaaatcatggtaaaaatatattggga 5642666  T
Q  142 aacgtgtaaacgtgcttttgtgtgttgcaaacgggaaatcatacatacgct 192  Q
    ||| || |||  || |||||||||||||||||||||||||| ||| |||||    
T  5642667 aacatgcaaatttggttttgtgtgttgcaaacgggaaatcaaacacacgct 5642717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 6368817 - 6368752
Alignment:
Q  114 tgaaaatcacggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacgggaaa 179  Q
    |||||||||||||||||||  ||||| || |||| |||||||||||| ||||||||||||| ||||    
T  6368817 tgaaaatcacggcaaaaatgcatcgggaagcgtgcaaacgtgcttttctgtgttgcaaacgtgaaa 6368752  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 43292733 - 43292870
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaa 141  Q
    ||||| |||| |||||||||  ||| || || |||||||||  ||| |||| ||| || ||||| ||||||||||||||||||| ||||| ||| | |||    
T  43292733 tttgtcaaacagagtttgatggaaatcacggtaaaaaaccatgttaacgtaaaagttagtatttggagcttctgaaaatcacggtaaaaacatacccgaa 43292832  T
Q  142 aacgtgtaaacgtgcttttgtgtgttgcaaacgggaaa 179  Q
    ||| || ||||||||||||||||| ||||||| |||||    
T  43292833 aacatgcaaacgtgcttttgtgtggtgcaaacaggaaa 43292870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 9607724 - 9607572
Alignment:
Q  28 tgtttgatacaacttttgtaaaacggagtttgataaaaaccatggcaaaaaa-ccacattagcgtagaagctaatatttagagcttctgaaaatcacggc 126  Q
    |||||| |||| | |||| ||||||| ||||||| |||| || ||||||||| |||| |||||  ||||| || |||||||||||||| ||||| |||||    
T  9607724 tgtttggtacagcgtttgcaaaacggtgtttgatgaaaatcacggcaaaaaaaccacgttagcaaagaagttagtatttagagcttctaaaaattacggc 9607625  T
Q  127 aaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacgggaaa 179  Q
    ||||| |  | |  |||| || |||||||||||||||||| ||||||||||||    
T  9607624 aaaaacacgttgagaaacatgcaaacgtgcttttgtgtgtcgcaaacgggaaa 9607572  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 2990551 - 2990706
Alignment:
Q  23 gtgtttgtttgatacaacttttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatca 122  Q
    |||| ||||||||||||| ||| |||||||| ||||||| |||| || |  |||||||||||||| |  ||||| || |||||  |||||||||||||||    
T  2990551 gtgtctgtttgatacaacgtttataaaacggtgtttgatgaaaatcacgataaaaaaccacattaacaaagaagttagtatttgtagcttctgaaaatca 2990650  T
Q  123 cggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacgggaaa 179  Q
    || |||||||| |||  ||||| || |||| || |||||| |||| |||| ||||||    
T  2990651 cgacaaaaataaatc-aaaaacatgcaaacatgtttttgtatgttacaaatgggaaa 2990706  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 45847726 - 45847816
Alignment:
Q  92 agaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacgggaaatca 182  Q
    ||||| || ||||||||| |||||||||| |||| ||||||| ||||  ||| |||||||||||||||| | ||||| ||| |||||||||    
T  45847726 agaagttagtatttagagtttctgaaaattacggtaaaaatacatcgagaaatgtgtaaacgtgcttttatatgttgtaaatgggaaatca 45847816  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 35998146 - 35998243
Alignment:
Q  85 ttagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacgggaaatca 182  Q
    |||||| ||||| || ||||| |||||||| ||||||||| ||||||   ||| | || | || |||||||||||||||| |||||||||||||||||    
T  35998146 ttagcgaagaagttagtatttggagcttctaaaaatcacgacaaaaacgcatcaggaagcatgcaaacgtgcttttgtgtattgcaaacgggaaatca 35998243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 47852441 - 47852291
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaa 141  Q
    ||||||||||||||||||||  |||   ||||| |||||||| ||||  |||||| || |||||  |||||||  | ||| | |||||| |||| |  ||    
T  47852441 tttgtaaaacggagtttgatggaaattgtggcagaaaaccacgttagtttagaagttagtatttgaagcttctagatatcgctgcaaaattatacccaaa 47852342  T
Q  142 aacgtgtaaacgtgcttttgtgtgttgcaaacgggaaatcatacatacgct 192  Q
    |||||||||| ||  |||| |||||||||||||  |||||| ||| |||||    
T  47852341 aacgtgtaaatgtatttttatgtgttgcaaacgaaaaatcaaacacacgct 47852291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 37833 - 37942
Alignment:
Q  22 agtgtttgtttgatacaacttttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatc 121  Q
    ||||||||||| ||||| | |||| ||||| | ||| |||  ||| || ||||||||||||| |||||  |||||||| ||||| |||||||||||||||    
T  37833 agtgtttgtttaatacagcgtttgcaaaacagtgttcgatggaaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatc 37932  T
Q  122 acggcaaaaa 131  Q
    ||||||||||    
T  37933 acggcaaaaa 37942  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 12429743 - 12429873
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaac-cacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcgga 140  Q
    |||| ||||| | |||||||  ||| || |||||||||| ||| |||||| | ||||||  ||||||||||| | |||||||||||||||||  || |||    
T  12429743 tttgcaaaacagtgtttgatggaaatcacggcaaaaaactcacgttagcgaataagctagaatttagagcttatcaaaatcacggcaaaaatgcattgga 12429842  T
Q  141 aaacgtgtaaacgtgcttttgtgtgttgcaa 171  Q
    || |||| |||||||||||| ||||||||||    
T  12429843 aagcgtgcaaacgtgcttttatgtgttgcaa 12429873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 38153342 - 38153489
Alignment:
Q  50 acggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaaaacgtgta 149  Q
    ||||| |||||| |||  || ||||||||| ||  ||| ||| ||||||| |||||  |||||||| ||||||| ||||||| ||||||  |  ||| ||    
T  38153342 acggaatttgatgaaagtcacggcaaaaaatcagtttaacgtggaagctagtatttgaagcttctgcaaatcacagcaaaaagatatcgagaggcgtata 38153441  T
Q  150 aacgtgcttttgtgtgttgcaaacgggaaatcatacatacgcttagcc 197  Q
    |||||| |||||||||||| |||||||||| || ||| | ||||||||    
T  38153442 aacgtgattttgtgtgttggaaacgggaaaccaaacacatgcttagcc 38153489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 17759422 - 17759332
Alignment:
Q  84 attagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgcaaacg 174  Q
    |||| |||||||| || |||| ||| |||||||||||||| ||||||| | |||| |||||||| |||| || |||||||| |||||||||    
T  17759422 attaacgtagaagttagtattcagaacttctgaaaatcacagcaaaaacacatcgtaaaacgtgcaaacatgtttttgtgtattgcaaacg 17759332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 8959432 - 8959344
Alignment:
Q  54 agtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaaa 142  Q
    ||||||||||||| || ||| ||||| ||  |||||||||||| |  ||||| |||| ||| |||||||| |||||||| |||| ||||    
T  8959432 agtttgataaaaatcacggctaaaaatcatgttagcgtagaagttggtattttgagcatctcaaaatcactgcaaaaatgtatcagaaa 8959344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 49613 - 49476
Alignment:
Q  42 tttgtaaaacggagtttgataaaaaccatggcaaaaaaccacattagcgtagaagctaatatttagagcttctgaaaatcacggcaaaaatatatcggaa 141  Q
    |||| |||||||||||| || |||| || | ||||||||||  | |||||||||| || ||||||||||||||  | |||| ||||| ||   || | ||    
T  49613 tttgcaaaacggagtttaatgaaaatcacgacaaaaaaccatgtaagcgtagaagttagtatttagagcttctagagatcatggcaacaacgcattgaaa 49514  T
Q  142 aacgtgtaaacgtgcttttgtgtgttgcaaacgggaaa 179  Q
    | |||| |||||||||||||| | ||||||||||||||    
T  49513 agcgtgcaaacgtgcttttgtttattgcaaacgggaaa 49476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 6807165 - 6807122
Alignment:
Q  89 cgtagaagctaatatttagagcttctgaaaatcacggcaaaaat 132  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||    
T  6807165 cgtagaagctagtatttagagcttctggaaatcacagcaaaaat 6807122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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