View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_low_75 (Length: 227)
Name: NF3605_low_75
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_low_75 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3619625 - 3619833
Alignment:
| Q |
1 |
ctggcaatccttcagtgtctatatcttcctttgtcataccttcaggcatttcccaatcaaaagagttaagaaggtttgcggttatcatttctactgtggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3619625 |
ctggcaatccttcagtgtctatatcttcctttgtcataccttcaggcatttcccaatcaaaagagttaagaaggtttgcggttatcatttctactgtggc |
3619724 |
T |
|
| Q |
101 |
gattcctaatggtatgccagggcatattctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3619725 |
gattcctaatggtatgccagggcatattctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaatctatatcattgtttaagaatctc |
3619824 |
T |
|
| Q |
201 |
tctggataa |
209 |
Q |
| |
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||||||||| |
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| T |
3619825 |
tctggataa |
3619833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3630001 - 3630209
Alignment:
| Q |
1 |
ctggcaatccttcagtgtctatatcttcctttgtcataccttcaggcatttcccaatcaaaagagttaagaaggtttgcggttatcatttctactgtggc |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||| |||||||||| || ||||| |
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| T |
3630001 |
ctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcgtttcccaatcaaatgaattaagaaggtttgcaattatcatttccaccgtggc |
3630100 |
T |
|
| Q |
101 |
gattcctaatggtatgccagggcatattctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctc |
200 |
Q |
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|||||| ||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||| |||| ||||||||||||||||| |||||||||||| |
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| T |
3630101 |
gattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaactcaaaatcccgtcctttaaaatctatatcattgtttaagaatctc |
3630200 |
T |
|
| Q |
201 |
tctggataa |
209 |
Q |
| |
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||||||||| |
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| T |
3630201 |
tctggataa |
3630209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 16084 - 15876
Alignment:
| Q |
1 |
ctggcaatccttcagtgtctatatcttcctttgtcataccttcaggcatttcccaatcaaaagagttaagaaggtttgcggttatcatttctactgtggc |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||| |||||||||| || ||||| |
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| T |
16084 |
ctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcgtttcccaatcaaatgaattaagaaggtttgcaattatcatttccaccgtggc |
15985 |
T |
|
| Q |
101 |
gattcctaatggtatgccagggcatattctacgccctgcaccgaatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctc |
200 |
Q |
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|
|||||| ||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||| |||| ||||||||||||||||| |||||||||||| |
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| T |
15984 |
gattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaactcaaaatcccgtcctttaaaatctatatcattgtttaagaatctc |
15885 |
T |
|
| Q |
201 |
tctggataa |
209 |
Q |
| |
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||||||||| |
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| T |
15884 |
tctggataa |
15876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 31071746 - 31071811
Alignment:
| Q |
144 |
aatggaataaactcgaaattttgtcccttaaaatctatatcattatttaagaatctctctggataa |
209 |
Q |
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|||||||| | |||||||| |||||| || |||||||||||| || || |||||||||||||||| |
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| T |
31071746 |
aatggaatcagctcgaaatcttgtccttttaaatctatatcactacctatgaatctctctggataa |
31071811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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