View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3606_high_1 (Length: 731)

Name: NF3606_high_1
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3606_high_1
NF3606_high_1
[»] chr6 (11 HSPs)
chr6 (255-725)||(785249-785730)
chr6 (20-190)||(785795-785965)
chr6 (497-584)||(1334687-1334774)
chr6 (257-319)||(407190-407252)
chr6 (497-586)||(26402624-26402713)
chr6 (506-590)||(32225330-32225414)
chr6 (515-590)||(26178527-26178602)
chr6 (497-532)||(6751880-6751915)
chr6 (555-590)||(19369889-19369924)
chr6 (541-592)||(34197186-34197237)
chr6 (497-530)||(19369843-19369876)
[»] chr2 (2 HSPs)
chr2 (497-592)||(43585943-43586038)
chr2 (540-592)||(14450705-14450757)
[»] chr7 (4 HSPs)
chr7 (497-590)||(25956471-25956563)
chr7 (497-578)||(1885599-1885675)
chr7 (497-590)||(5937361-5937454)
chr7 (541-587)||(48963995-48964041)
[»] scaffold0314 (1 HSPs)
scaffold0314 (497-586)||(8974-9061)
[»] chr3 (1 HSPs)
chr3 (497-589)||(34834869-34834960)
[»] chr4 (7 HSPs)
chr4 (541-587)||(39619045-39619091)
chr4 (497-587)||(13307903-13307993)
chr4 (542-592)||(37496786-37496836)
chr4 (541-590)||(5998886-5998935)
chr4 (497-578)||(44362692-44362773)
chr4 (497-528)||(11797630-11797661)
chr4 (541-579)||(21152895-21152933)
[»] scaffold0122 (1 HSPs)
scaffold0122 (536-590)||(10247-10301)
[»] chr1 (2 HSPs)
chr1 (541-587)||(18950996-18951041)
chr1 (498-531)||(7888122-7888155)
[»] chr5 (4 HSPs)
chr5 (549-589)||(9031879-9031919)
chr5 (520-587)||(21319877-21319944)
chr5 (544-590)||(7621170-7621216)
chr5 (495-532)||(8420051-8420088)
[»] scaffold0504 (1 HSPs)
scaffold0504 (541-592)||(8640-8691)
[»] chr8 (1 HSPs)
chr8 (497-530)||(10002163-10002196)


Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 255 - 725
Target Start/End: Complemental strand, 785730 - 785249
Alignment:
Q  255 tgggatgcactcccacttcaaccatgttttcgaccgtgatttccttcattaaatataggtaacaaagtttctatctcataaccaagcaaaaaatgataat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785730 tgggatgcactcccacttcaaccatgttttcgaccgtgatttccttgattaaatataggtaacaaagtttctatctcataaccaagcaaaaaatgataat 785631  T
Q  355 ttggagtttcaataataacttgctttccttttttcagcttaattagatttcttgtacctatttgttagccttttgaaataacagtggttacctatgaagc 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785630 ttggagtttcaataataacttgctttccttttttcagcttaattagatttcttgtacctatttgttagccttttgaaataacagtggttacctatgaagc 785531  T
Q  455 acggacactgacacggacacggataaaattttcnnnnnnntaacataatttaatgtaatcacaa-----------gtgtcggtgtcggatatgatgtgtg 543  Q
    |||||||| ||||||||||| ||||||||||||       | |||||||| |||||||||||||           |||||||||||| | ||||||||||    
T  785530 acggacacagacacggacactgataaaattttcaaaataatgacataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtcgaacatgatgtgtg 785431  T
Q  544 tcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggtggttacatagtgtaacttttacaaaattacactggttcaacttagtttagg 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785430 tcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggtggttacatagtgtaacttttacaaaattacactggttcaacttagtttagg 785331  T
Q  644 taaataatcatgatgctaaacatacacatagttttaactgcaactgtttgcgttgtggagaaataaatttgatgatgatgtc 725  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  785330 taaataatcatgatgctaaacatacacatagttttaactgcaactgtttgcgttgtggagaaataaatttgatgttgatgtc 785249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 785965 - 785795
Alignment:
Q  20 taccaatagtgtctatatattagaaaccaaaatcaaaggcattgagtagaaaaatgtagtaaaggaagagagtggttcaaaggttgtggtacgtagcact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785965 taccaatagtgtctatatattagaaaccaaaatcaaaggcattgagtagaaaaatgtagtaaaggaagagagtggttcaaaggttgtggtacgtagcact 785866  T
Q  120 aaatttcaaaaccagtaacacaaatatccctccatcttcaatcatcatcttagttttgctggatttcaaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785865 aaatttcaaaaccagtaacacaaatatccctccatcttcaatcatcatcttagttttgctggatttcaaat 785795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 497 - 584
Target Start/End: Original strand, 1334687 - 1334774
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgca 584  Q
    |||||||| ||||||||||||| ||||||||||| | | |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  1334687 acataattcaatgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 407190 - 407252
Alignment:
Q  257 ggatgcactcccacttcaaccatgttttcgaccgtgatttccttcattaaatataggtaacaa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  407190 ggatgcactcccacttcaaccatgttttcgaccgtgatttccttgattaaatataggtaacaa 407252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 586
Target Start/End: Complemental strand, 26402713 - 26402624
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 586  Q
    |||||||| | ||||||||||||||||||||||||| | |||   ||| |||||||  |||||  |||||||||||||||||||||||||    
T  26402713 acataattcagtgtaatcacaagtgtcggtgtcggacacgatacatgttggacaccgagacacttcttcaatcagaagtgtccgtgcaac 26402624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 506 - 590
Target Start/End: Complemental strand, 32225414 - 32225330
Alignment:
Q  506 aatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||||||||| |||||||||||||| | ||    ||||||||||| |||||||||||||||||| |||||  ||||| |||||    
T  32225414 aatgtaatcacaggtgtcggtgtcggacacgacccctgtcggacacctggacacaccttcaatcaggagtgtttgtgcagcagag 32225330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 590
Target Start/End: Original strand, 26178527 - 26178602
Alignment:
Q  515 acaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||| ||||||||||| | ||   |||||||||| | ||||| ||||||||||||||||||||||||| |||||    
T  26178527 acaagtatcggtgtcggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgtccgtgcatcagag 26178602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 532
Target Start/End: Complemental strand, 6751915 - 6751880
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcgga 532  Q
    |||||||| |||||||||||||||||||||||||||    
T  6751915 acataattcaatgtaatcacaagtgtcggtgtcgga 6751880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 590
Target Start/End: Original strand, 19369889 - 19369924
Alignment:
Q  555 gacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19369889 gacacgccttcaatcagaagtgtccgtgcaacagag 19369924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 592
Target Start/End: Original strand, 34197186 - 34197237
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    |||||||| ||||||||||||||||||  ||||||||| |||||| ||||||    
T  34197186 gtgtcggagaccaggacacaccttcaactagaagtgtcagtgcaatagaggt 34197237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 530
Target Start/End: Original strand, 19369843 - 19369876
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcg 530  Q
    |||||||| |||||||||||||||||||||||||    
T  19369843 acataattcaatgtaatcacaagtgtcggtgtcg 19369876  T

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Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 497 - 592
Target Start/End: Complemental strand, 43586038 - 43585943
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    |||||||| ||||||||||||||||||||||||||| | |||  ||||| |||||  |||||||||||||||||||||||| ||||||||||||||    
T  43586038 acataattcaatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacatggacacaccttcaatcagaagtgttcgtgcaacagaggt 43585943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 14450757 - 14450705
Alignment:
Q  540 tgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    |||||| |||||| ||||||  |||||||||||||||||||||||||||||||    
T  14450757 tgtgtcagacaccgggacacgtcttcaatcagaagtgtccgtgcaacagaggt 14450705  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 497 - 590
Target Start/End: Original strand, 25956471 - 25956563
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||||| ||||||||||||||||||||||||||| | |||   ||||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  25956471 acataattcaatgtaatcacaagtgtcggtgtcggacacgatacatgtcggaca-cgggacacgccttcaatcagaagtgtccgtgcaatagag 25956563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 497 - 578
Target Start/End: Original strand, 1885599 - 1885675
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtc 578  Q
    |||||||| |||||||||||||||||||||||||    || || ||||||||||||||||||||| ||||||||||||||||    
T  1885599 acataattcaatgtaatcacaagtgtcggtgtcg----tgttg-gtgtcggacaccaggacacacgttcaatcagaagtgtc 1885675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 590
Target Start/End: Complemental strand, 5937454 - 5937361
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||||| |||||||||||||||||| |||||||  | |||   ||||||||||||| | || ||||||||  ||||||||||||||| ||||    
T  5937454 acataattcaatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacaccagaatacgccttcaatatgaagtgtccgtgcaatagag 5937361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 587
Target Start/End: Complemental strand, 48964041 - 48963995
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    |||||| ||||| ||||| |||||||||||||||||||| |||||||    
T  48964041 gtgtcgaacaccgggacataccttcaatcagaagtgtccatgcaaca 48963995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 497 - 586
Target Start/End: Original strand, 8974 - 9061
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 586  Q
    |||||||| || |||||||||||||||||||||  || |  ||||||||||||||| |||||| |||||||||||||||||| |||||||    
T  8974 acataattcaacgtaatcacaagtgtcggtgtc--atgtcgtgtgtgtcggacaccgggacacgccttcaatcagaagtgtctgtgcaac 9061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 497 - 589
Target Start/End: Complemental strand, 34834960 - 34834869
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacaga 589  Q
    |||||||| ||| ||||||| ||| |||||||||||  ||||   ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  34834960 acataattcaat-taatcacgagtatcggtgtcggacttgatacatgtcggacaccgggacacgccttcaatcagaagtgtccgtgcaacaga 34834869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 541 - 587
Target Start/End: Complemental strand, 39619091 - 39619045
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  39619091 gtgtcggacaccgggacacaccttcaatcagaagtgtccgtgcaaca 39619045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 587
Target Start/End: Original strand, 13307903 - 13307993
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    |||||||| ||||||||||||||||| ||||||||| | ||   ||||| ||||||| ||||  |||||||||||||||||  ||||||||    
T  13307903 acataattcaatgtaatcacaagtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaagtgttggtgcaaca 13307993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 592
Target Start/End: Original strand, 37496786 - 37496836
Alignment:
Q  542 tgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    ||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  37496786 tgtcggacaccgggacacgccttcaatcataagtgtccgtgcaacagaggt 37496836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 590
Target Start/End: Original strand, 5998886 - 5998935
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  5998886 gtgtcggacacctggacacaccttcaatcataagtgtcggtgcaacagag 5998935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 578
Target Start/End: Original strand, 44362692 - 44362773
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtc 578  Q
    |||||||||||||||||||||||||| |||||| || | ||   || ||||||| | ||||||||||| |||||||||||||    
T  44362692 acataatttaatgtaatcacaagtgttggtgtcagacacgacacgtatcggacatcgggacacaccttaaatcagaagtgtc 44362773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 528
Target Start/End: Complemental strand, 11797661 - 11797630
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgt 528  Q
    ||||||||||||||||||||||||||||||||    
T  11797661 acataatttaatgtaatcacaagtgtcggtgt 11797630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 579
Target Start/End: Complemental strand, 21152933 - 21152895
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtcc 579  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  21152933 gtgtcggacatcaggacactccttcaatcagaagtgtcc 21152895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 536 - 590
Target Start/End: Complemental strand, 10301 - 10247
Alignment:
Q  536 gatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  10301 gatgcgtgtcggacagcaggacacaccttcaatcagaagtgtctgtgcaagagag 10247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 587
Target Start/End: Original strand, 18950996 - 18951041
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  18950996 gtgtcggacaccaggacacaccttcaatcagaagtgt-cgtgcaaca 18951041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 531
Target Start/End: Original strand, 7888122 - 7888155
Alignment:
Q  498 cataatttaatgtaatcacaagtgtcggtgtcgg 531  Q
    ||||||||||||||||||||||||||||||||||    
T  7888122 cataatttaatgtaatcacaagtgtcggtgtcgg 7888155  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 589
Target Start/End: Complemental strand, 9031919 - 9031879
Alignment:
Q  549 caccaggacacaccttcaatcagaagtgtccgtgcaacaga 589  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  9031919 caccaggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 520 - 587
Target Start/End: Complemental strand, 21319944 - 21319877
Alignment:
Q  520 tgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    ||||||||||||| | ||||| | ||| ||||||||| | |||||||||||||||||| |||||||||    
T  21319944 tgtcggtgtcggacacgatgtatatcgaacaccaggatagaccttcaatcagaagtgttcgtgcaaca 21319877  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 590
Target Start/End: Complemental strand, 7621216 - 7621170
Alignment:
Q  544 tcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||    
T  7621216 tcggacatcaggacacgtcttcaatcagaagtgtccgtgcaacagag 7621170  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 532
Target Start/End: Original strand, 8420051 - 8420088
Alignment:
Q  495 taacataatttaatgtaatcacaagtgtcggtgtcgga 532  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  8420051 taacataattcaatgtaattacaagtgtcggtgtcgga 8420088  T

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Target: scaffold0504 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 541 - 592
Target Start/End: Complemental strand, 8691 - 8640
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    ||||| |||||| |||||  ||||||||||||||||||||||||||||||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtccgtgcaacagaggt 8640  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 530
Target Start/End: Complemental strand, 10002196 - 10002163
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcg 530  Q
    ||||||||||||||||||||| ||||||||||||    
T  10002196 acataatttaatgtaatcacatgtgtcggtgtcg 10002163  T

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