View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3606_high_12 (Length: 411)
Name: NF3606_high_12
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 18486610 - 18486974
Alignment:
| Q |
17 |
acttctcacccatagatccagttatactagaaattccttctgctgcatcttcaacttcttcaaccaaaaacaaccaattacaggtgaaaattttatcaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18486610 |
acttctcacccatagatccagttatactagaaattccttctgctgcatcttcaacttcttcaaccaaaaacaaccaattacaggtgaatattttatcaat |
18486709 |
T |
|
| Q |
117 |
atttgttacataatttaactatagctatattgttcaatatcatatgtatttaattgtctattaatgtttccataacatgatagaatgtgattaaactcgg |
216 |
Q |
| |
|
|||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
18486710 |
atttgtcacatt--------------------ttcaaaataatatgtatttaattgtctattaatgtttccataacataacagaatgtgattaaactcgg |
18486789 |
T |
|
| Q |
217 |
agaaggatttctgaaacaaccagaagatgtttgtgtggataaagatggtgctctatatacagctacgagagatggttggattaaaagaatggttaggaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
18486790 |
agaaggatttctgaaacaaccagaagatgtttgtgttgataaagatggtattttatatacagcaacaagagatggttggattaaaagaatggttaggaat |
18486889 |
T |
|
| Q |
317 |
gaaaattgggagaattggaagcatatagacagctcttctttgcttggaatcactacatctaaagatggtggtctcattgtctgtg |
401 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
18486890 |
ggaaattgggagaattggaagcatatagatagctcttctttgcttggaatcacaacatctaaagatggtggtctcattgtttgtg |
18486974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 18512959 - 18513323
Alignment:
| Q |
17 |
acttctcacccatagatccagttatactagaaattccttctgctgcatcttcaacttcttcaaccaaaaacaaccaattacaggtgaaaattttatcaac |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18512959 |
acttctcaccgatagatccagttatactagaaattccttcttctgcatcttcaccttcttcaaccaaaaacaaccaattacaggtgaatattttatcaat |
18513058 |
T |
|
| Q |
117 |
atttgttacataatttaactatagctatattgttcaatatcatatgtatttaattgtctattaatgtttccataacatgatagaatgtgattaaactcgg |
216 |
Q |
| |
|
||||| |||| ||||| || |||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
18513059 |
atttgccacatt--------------------ttcaaaataatatgtatttaattatctattaatgtttccataacataacagaatgtgattaaactcgg |
18513138 |
T |
|
| Q |
217 |
agaaggatttctgaaacaaccagaagatgtttgtgtggataaagatggtgctctatatacagctacgagagatggttggattaaaagaatggttaggaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18513139 |
agaaggatttctgaaacaaccagaagatgtttgtgttgataaaaatggtgttctatatacagctacaagagatggttggattaaaagaatggttaggaat |
18513238 |
T |
|
| Q |
317 |
gaaaattgggagaattggaagcatatagacagctcttctttgcttggaatcactacatctaaagatggtggtctcattgtctgtg |
401 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18513239 |
gaaaattgggagaattggaagcatatagatagctcttctttgcttggaatcactacatctaaagatggtggtctcattgtgtgtg |
18513323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 196 - 401
Target Start/End: Original strand, 18506620 - 18506825
Alignment:
| Q |
196 |
atagaatgtgattaaactcggagaaggatttctgaaacaaccagaagatgtttgtgtggataaagatggtgctctatatacagctacgagagatggttgg |
295 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
18506620 |
atagagtgtgattaaacttggagaaggatttctgaaacaaccagaagatgtttgtgttgataaagatggtgttctatatacagctacaagagatggttgg |
18506719 |
T |
|
| Q |
296 |
attaaaagaatggttaggaatgaaaattgggagaattggaagcatatagacagctcttctttgcttggaatcactacatctaaagatggtggtctcattg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18506720 |
attaaaagaatggttaggaatgaaaattgggagaattggaagcatatagatagctcttctttgcttggaatcactacatctaaagatggtggtctcattg |
18506819 |
T |
|
| Q |
396 |
tctgtg |
401 |
Q |
| |
|
| |||| |
|
|
| T |
18506820 |
tttgtg |
18506825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 18506482 - 18506515
Alignment:
| Q |
73 |
tcttcaaccaaaaacaaccaattacaggtgaaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
18506482 |
tcttcaaccaaaaacaaccaattacaggtgaaaa |
18506515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University