View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3606_high_13 (Length: 410)
Name: NF3606_high_13
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 392
Target Start/End: Original strand, 45585212 - 45585610
Alignment:
| Q |
6 |
gtcgaagaatatcaaatatgataagacattaaaaataacacactccaagatcacacgccaataccatcgaaacacaacccaagcgtgttacagcttcaat |
105 |
Q |
| |
|
|||||||| ||||||| |||||| | ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45585212 |
gtcgaagagaatcaaatctgataaaatattaaaaataacacactccaaaatcacatgccaataccatcaaaacacaacccaagcgtgttacagcttcaat |
45585311 |
T |
|
| Q |
106 |
aaagttaaccttaagggggtgtcaccttttactgaattttttccattgaaaaaacaatttattgcttaataatcagaagaaatattcgtaaaaacatata |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45585312 |
aaagttaaccttaagggggtgtcaccttttactgaatttttcccattgaaaaaacaatttattgct---taatcagaagaaatattcgtaaaaacatata |
45585408 |
T |
|
| Q |
206 |
g--------tattcgttaactggcatattcataattagatggataatcaaatcgaatctaattgtttaaaggtgaaagtca-------tacagactccaa |
290 |
Q |
| |
|
| ||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45585409 |
gtattcgactattcgttacatggcatattcacaattaaatggataatcaaatggaatctaattgtttaaaggtgaaagtcatacagattacagactccaa |
45585508 |
T |
|
| Q |
291 |
tttgtgccatgcaaatctcactgctatttgttcgtggtccccctttagagctataagtggagtggatgctttaagaacctaagatgctatatggtccctc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45585509 |
tttgtgccatgcaaatctcactgctatttgttcgtggtccccctttagagctataagtggagtggatgctttaagaacctaagatgctatatggtccctc |
45585608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University