View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3606_high_15 (Length: 372)

Name: NF3606_high_15
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3606_high_15
NF3606_high_15
[»] chr7 (5 HSPs)
chr7 (146-358)||(22592577-22592789)
chr7 (20-122)||(22592805-22592906)
chr7 (192-245)||(48881056-48881109)
chr7 (223-264)||(32547733-32547774)
chr7 (193-242)||(38914120-38914169)
[»] chr1 (2 HSPs)
chr1 (259-358)||(31146847-31146944)
chr1 (192-242)||(1403039-1403089)
[»] chr4 (8 HSPs)
chr4 (193-242)||(33570313-33570362)
chr4 (189-242)||(25370429-25370482)
chr4 (193-262)||(43079160-43079229)
chr4 (194-262)||(43079958-43080026)
chr4 (187-242)||(388747-388802)
chr4 (192-242)||(52597748-52597798)
chr4 (193-242)||(6862647-6862696)
chr4 (193-242)||(12639965-12640014)
[»] chr2 (5 HSPs)
chr2 (192-242)||(6849579-6849629)
chr2 (189-242)||(28223784-28223837)
chr2 (187-242)||(4769051-4769106)
chr2 (191-242)||(11256777-11256828)
chr2 (193-242)||(44829315-44829364)
[»] scaffold0229 (1 HSPs)
scaffold0229 (192-242)||(15270-15320)
[»] chr3 (2 HSPs)
chr3 (191-237)||(31168565-31168611)
chr3 (189-242)||(32672162-32672215)
[»] scaffold0039 (2 HSPs)
scaffold0039 (193-242)||(90615-90664)
scaffold0039 (201-264)||(90983-91047)
[»] chr5 (3 HSPs)
chr5 (193-242)||(4929543-4929592)
chr5 (192-244)||(25074282-25074334)
chr5 (192-244)||(25132251-25132303)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 146 - 358
Target Start/End: Complemental strand, 22592789 - 22592577
Alignment:
Q  146 cgagaacttctggcgatggattttgcgtgtcacaacaagacaatttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaat 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |||| |||||||||    
T  22592789 cgagaacttctggcgatggattttgcgtgtcacaacaagacaatttaggtggcatttcacatggaaaaggtcaatcctcttccactatagaaaagttaat 22592690  T
Q  246 atcatccattagatcaaatgttccaaagacacactcgttgatcactaatttcactattgcatctctagaatcaatatataaaattttgttttaccttttc 345  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22592689 atcattcattagatcaaatgttccaaagacacactcgttcatcactaatttcactattgcatctctaaaatcaatatataaaattttgttttaccttttc 22592590  T
Q  346 acttgattttcat 358  Q
    |||||||||||||    
T  22592589 acttgattttcat 22592577  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 22592906 - 22592805
Alignment:
Q  20 taacccaattacactctagcatttcatcttcaaaactaatggtatcaatactgataccagaacattcgttttttgagagatccaggaaatgatatcatga 119  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  22592906 taacccaattacactgtagcatttcaacttcaaaactaatggtatcaatactgatacaagaacattcgt-ttttgagagatccaggaaatgatatcatga 22592808  T
Q  120 atg 122  Q
    |||    
T  22592807 atg 22592805  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 48881109 - 48881056
Alignment:
Q  192 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaat 245  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||| |||||||    
T  48881109 aggtggcattttacatggaaaaggttaatcctttcccaccataggacagttaat 48881056  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 32547733 - 32547774
Alignment:
Q  223 ttttccaccataggaaagttaatatcatccattagatcaaat 264  Q
    ||||||||||||||||||||||| | | ||||||||||||||    
T  32547733 ttttccaccataggaaagttaatgttagccattagatcaaat 32547774  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 38914169 - 38914120
Alignment:
Q  193 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    ||||||||||  ||| |||||||| |||||||| ||||||||||||||||    
T  38914169 ggtggcatttaccatagaaaaggtgaatcctttcccaccataggaaagtt 38914120  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 31146847 - 31146944
Alignment:
Q  259 tcaaatgttccaaagacacactcgttgatcactaatttcactattgcatctctagaatcaatatataaaattttgttttaccttttcacttgattttcat 358  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  31146847 tcaaatgttccaaagacac--tcgttgatcactaatttcactattgtatctctagaataaatatataaaattttgttttaccttttcacttaattttcat 31146944  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 1403039 - 1403089
Alignment:
Q  192 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    ||||||||||| |||| |||||||| |||||||| ||||||| ||||||||    
T  1403039 aggtggcatttcacatggaaaaggttaatcctttcccaccatgggaaagtt 1403089  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 33570362 - 33570313
Alignment:
Q  193 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    |||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  33570362 ggtggcatttcacatggaaaaggtcaatccttttccaccataagaaagtt 33570313  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 25370482 - 25370429
Alignment:
Q  189 tttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    ||||||||||||||||||| | |||||| |||||||| ||||||| ||||||||    
T  25370482 tttaggtggcattttacatgggaaaggttaatcctttcccaccatgggaaagtt 25370429  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 43079160 - 43079229
Alignment:
Q  193 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaatatcatccattagatcaa 262  Q
    |||||||||| |||| | ||||| ||||| |||||||| || ||||||||||| | ||||||||||||||    
T  43079160 ggtggcatttcacatgggaaaggacaatctttttccacaatgggaaagttaattttatccattagatcaa 43079229  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 43080026 - 43079958
Alignment:
Q  194 gtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaatatcatccattagatcaa 262  Q
    ||||||||| |||| | ||||| ||||||||||| ||||| | ||||||||| |||||||| |||||||    
T  43080026 gtggcatttcacatgggaaaggacaatccttttctaccatggaaaagttaatttcatccatcagatcaa 43079958  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 388747 - 388802
Alignment:
Q  187 aatttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    |||||||||||||||| |||| | |||||| |||||||| ||||||| ||||||||    
T  388747 aatttaggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagtt 388802  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 52597798 - 52597748
Alignment:
Q  192 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    ||||||||||| |||| | |||||| ||||||||| |||||||||||||||    
T  52597798 aggtggcatttcacatgggaaaggttaatcctttttcaccataggaaagtt 52597748  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 6862647 - 6862696
Alignment:
Q  193 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    |||||||||| |||| | ||||||||||| ||||| ||||||||||||||    
T  6862647 ggtggcatttcacataggaaaggtcaatctttttctaccataggaaagtt 6862696  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 12639965 - 12640014
Alignment:
Q  193 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    |||||||||| |||| | |||||| |||||||||||||||| ||||||||    
T  12639965 ggtggcatttcacatgggaaaggttaatccttttccaccatgggaaagtt 12640014  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 6849629 - 6849579
Alignment:
Q  192 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    |||||||||||||||| |||||||| |||||||| ||||||| ||||||||    
T  6849629 aggtggcattttacatggaaaaggttaatcctttcccaccatgggaaagtt 6849579  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 28223784 - 28223837
Alignment:
Q  189 tttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    |||||||||||||| |||| | |||||| |||||||| ||||||||||||||||    
T  28223784 tttaggtggcatttcacatgggaaaggttaatcctttcccaccataggaaagtt 28223837  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 4769106 - 4769051
Alignment:
Q  187 aatttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    ||||| |||||||||| |||| |||||||  |||||||| ||||||||||||||||    
T  4769106 aatttgggtggcatttaacatggaaaaggggaatcctttcccaccataggaaagtt 4769051  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 11256828 - 11256777
Alignment:
Q  191 taggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    ||||||||||||||||| |||||||| |||| |||||||||||  |||||||    
T  11256828 taggtggcattttacatggaaaaggttaatcattttccaccatgagaaagtt 11256777  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 44829364 - 44829315
Alignment:
Q  193 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    |||||||||| |||| | || ||| |||||||||||||||||||||||||    
T  44829364 ggtggcatttcacatgggaatggtgaatccttttccaccataggaaagtt 44829315  T

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Target: scaffold0229 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 15320 - 15270
Alignment:
Q  192 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    ||||||||||| |||| |||||||| |||||||| ||||||| ||||||||    
T  15320 aggtggcatttcacatggaaaaggttaatcctttcccaccatgggaaagtt 15270  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 31168611 - 31168565
Alignment:
Q  191 taggtggcattttacattgaaaaggtcaatccttttccaccatagga 237  Q
    |||||| |||||||||| | |||||| ||||||||||||||||||||    
T  31168611 taggtgacattttacatgggaaaggttaatccttttccaccatagga 31168565  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 32672162 - 32672215
Alignment:
Q  189 tttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    ||||||||||||||||||| | |||||| |||||||| ||| ||| ||||||||    
T  32672162 tttaggtggcattttacatgggaaaggttaatcctttcccaacatgggaaagtt 32672215  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 90615 - 90664
Alignment:
Q  193 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    |||||||||| |||| | |||||| |||| ||||||||||||||||||||    
T  90615 ggtggcatttcacatgggaaaggtgaatcattttccaccataggaaagtt 90664  T

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Target: scaffold0039; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 91047 - 90983
Alignment:
Q  201 tttacattgaaaaggtcaatccttttccaccataggaaagttaata-tcatccattagatcaaat 264  Q
    ||||||| |||||||| |||||||| ||||||||||||| || ||| | |||| |||||||||||    
T  91047 tttacatggaaaaggtgaatcctttcccaccataggaaaatttatattgatcctttagatcaaat 90983  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 4929592 - 4929543
Alignment:
Q  193 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 242  Q
    |||||||||| |||| | |||||| |||||||||||||||| ||||||||    
T  4929592 ggtggcatttcacatgggaaaggttaatccttttccaccatgggaaagtt 4929543  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 25074282 - 25074334
Alignment:
Q  192 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaa 244  Q
    ||||||||||| |||| |||| ||| |||| ||||||||||| ||||||||||    
T  25074282 aggtggcatttcacatggaaatggttaatctttttccaccatgggaaagttaa 25074334  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 25132251 - 25132303
Alignment:
Q  192 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaa 244  Q
    ||||||||||| |||| |||| ||| |||| ||||||||||| ||||||||||    
T  25132251 aggtggcatttcacatggaaatggttaatctttttccaccatgggaaagttaa 25132303  T

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