View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3606_high_16 (Length: 370)

Name: NF3606_high_16
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3606_high_16
NF3606_high_16
[»] chr8 (2 HSPs)
chr8 (14-362)||(37020883-37021231)
chr8 (279-362)||(37043782-37043865)
[»] chr4 (3 HSPs)
chr4 (148-244)||(18912284-18912380)
chr4 (159-244)||(39593819-39593903)
chr4 (148-244)||(34670586-34670682)
[»] chr5 (2 HSPs)
chr5 (267-313)||(30900061-30900107)
chr5 (148-244)||(31336158-31336253)
[»] scaffold0016 (1 HSPs)
scaffold0016 (285-322)||(90481-90518)
[»] chr6 (1 HSPs)
chr6 (280-313)||(20848631-20848664)
[»] chr7 (1 HSPs)
chr7 (216-319)||(31169280-31169380)


Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 37020883 - 37021231
Alignment:
Q  14 aaaacaacaaagatataagagaccagtattagagaaaaccaacacactaatatatttgtatagctagttcggatcaatatgtcagacatctgaagagaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37020883 aaaacaacaaagatataagagaccagtattagagaaaaccaacacactaatatatttgtatagctagttcggatcaatatgtcagacatctgaagagaga 37020982  T
Q  114 acaaatcttcaatccactatgatatagtgcatgttacaaagaggatacaagaaattagatcacaatctcacgaagaataaaccataatttttaccatttt 213  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37020983 acaaatcttcaatccactatgatatagtgcgtgttacaaagaggatacaagaaattagatcacaatctcacgaagaataaaccataatttctaccatttt 37021082  T
Q  214 gtcaagtcagtcaaactcacaataaatcctatgataagaaaaacaggagagatagcttttctatctttcctctaatgaaatcttactatccaaggtgttt 313  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37021083 gtcaagtcagtcaaactcacaatgaatcctatgatgagaaaaacaggagagatagcttttctatctttcctctaatgaaatcttactatccaaggtgttt 37021182  T
Q  314 gtgaagagtattacagcccaagcatcccaccggaagacactcaaccctt 362  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37021183 gtgaagagtattacagcccaagcatcccaccagaagacactcaaccctt 37021231  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 37043782 - 37043865
Alignment:
Q  279 tttcctctaatgaaatcttactatccaaggtgtttgtgaagagtattacagcccaagcatcccaccggaagacactcaaccctt 362  Q
    |||||||||||||||||| || ||||||||||||||| ||| || || | | ||||| ||| |||   ||||||||||||||||    
T  37043782 tttcctctaatgaaatctcaccatccaaggtgtttgtcaagtgttttccggtccaagaatctcactcaaagacactcaaccctt 37043865  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 18912380 - 18912284
Alignment:
Q  148 tacaaagaggatacaagaaattagatcacaatctcacgaagaataaaccataattttta-ccattttgtcaagtcagtcaaactcacaataaatccta 244  Q
    |||||| ||||||||||||||||| | |||| ||||| ||||| ||||| ||| || || ||||||| |||||||| |||||| |||||| |||||||    
T  18912380 tacaaaaaggatacaagaaattagtttacaaactcacaaagaacaaaccctaaattatatccatttt-tcaagtcactcaaacccacaatgaatccta 18912284  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 39593819 - 39593903
Alignment:
Q  159 tacaagaaattagatcacaatctcacgaagaataaaccataatttttaccattttgtcaagtcagtcaaactcacaataaatccta 244  Q
    ||||||||||||| | |||| ||||| |||||| |||| |||||| ||||  |||||||||||| |||||| |||||| |||||||    
T  39593819 tacaagaaattagtttacaaactcacaaagaatcaacc-taatttctacccctttgtcaagtcactcaaacccacaatgaatccta 39593903  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 34670682 - 34670586
Alignment:
Q  148 tacaaagaggatacaagaaattagatcacaatctcacgaagaataaaccataattttta-ccattttgtcaagtcagtcaaactcacaataaatccta 244  Q
    |||||||||| ||||||||||||| | |  | ||||| ||||| ||| |||||||| || ||||||| |||||||| ||| ||||||||| |||||||    
T  34670682 tacaaagaggttacaagaaattagcttaatagctcacaaagaacaaatcataatttctatccatttt-tcaagtcactcacactcacaatgaatccta 34670586  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 30900061 - 30900107
Alignment:
Q  267 agcttttctatctttcctctaatgaaatcttactatccaaggtgttt 313  Q
    ||||||| |||| ||||||||||||||||| |||| |||||||||||    
T  30900061 agcttttttatccttcctctaatgaaatctcactacccaaggtgttt 30900107  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 31336158 - 31336253
Alignment:
Q  148 tacaaagaggatacaagaaattagatcacaatctcacgaagaataaaccataattttta-ccattttgtcaagtcagtcaaactcacaataaatccta 244  Q
    |||||||||  |||||||||||||||| | ||||||| ||||| ||| | | |||| || ||||||  |||||||| |||||| ||||||||||||||    
T  31336158 tacaaagagcttacaagaaattagatcccgatctcactaagaaaaaatccttatttatatccattt--tcaagtcactcaaacccacaataaatccta 31336253  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 90481 - 90518
Alignment:
Q  285 ctaatgaaatcttactatccaaggtgtttgtgaagagt 322  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  90481 ctaatgagatcttactatccaaggtgcttgtgaagagt 90518  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 20848631 - 20848664
Alignment:
Q  280 ttcctctaatgaaatcttactatccaaggtgttt 313  Q
    ||||||||||||||||||| ||||||||||||||    
T  20848631 ttcctctaatgaaatcttattatccaaggtgttt 20848664  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 319
Target Start/End: Complemental strand, 31169380 - 31169280
Alignment:
Q  216 caagtcagtcaaactcacaataaatcctatgataagaaaaacaggagagatagcttttctatctttcctctaatgaaatcttactatccaaggtgtttgt 315  Q
    ||||||| ||||||||||||| ||||  || | ||| |||||| |||| | |||||||  |||||||   |||| |||||| ||||||||||||||||||    
T  31169380 caagtcactcaaactcacaatgaatc--ataacaag-aaaacaagagataaagcttttggatctttctattaattaaatctcactatccaaggtgtttgt 31169284  T
Q  316 gaag 319  Q
    ||||    
T  31169283 gaag 31169280  T

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