View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_high_17 (Length: 359)
Name: NF3606_high_17
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 33 - 342
Target Start/End: Original strand, 5293182 - 5293491
Alignment:
| Q |
33 |
gaaaccattgtaaaatcaaaggaaaacccctataaattctttgtccactgttgtcctctttaatctttatcactaaagttaatacccaaagaaaattgac |
132 |
Q |
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| T |
5293182 |
gaaaccattgtaaaatcaaaggaaaacccctataaattctttgtccactgttgtcctctttaatctttatcactaaagttaataccgaaagaaaattgac |
5293281 |
T |
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| Q |
133 |
acaataattcatcttaagatttcagattttcaatgatgtcaattttgatgattagtcgatacatactactgactttaaacggacctttacaagtaaatgg |
232 |
Q |
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| T |
5293282 |
acaataattcatcttaagatttcagattttcaacgatgttaattttgatgattagtcgatacatactactgactttaaacggacccttacaagtgaatgg |
5293381 |
T |
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| Q |
233 |
ttcctcaaagtagtagtcattgagccggatgtcgagttttagaaaacctaaaaaataatcaatctaatctttcaaaccaataacataaactccaactttc |
332 |
Q |
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| T |
5293382 |
ttcctcaaagtagtcgtcattgagccggatgccgagttttaaaaaacctaaaaaataatccatctaatctttcaaaccaataacataaactccaactttc |
5293481 |
T |
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| Q |
333 |
atctcaaagt |
342 |
Q |
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| T |
5293482 |
atctcaaagt |
5293491 |
T |
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