View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_high_24 (Length: 254)
Name: NF3606_high_24
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_high_24 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 12290126 - 12289882
Alignment:
| Q |
10 |
gcacagacacaggacactgacatgtcgacctcgataatattttaagataatataattcagggtaataacatgcagaaacactcacatggcagttctcaat |
109 |
Q |
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| T |
12290126 |
gcacagacacaggacactgacatgtcgacctcgataatattttaagataataaaattcagggtaataacatgcagaaacactcacatggcagttctcaat |
12290027 |
T |
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| Q |
110 |
gaacgaaggaatgaatacaatgaagcccaacaaacattacactaacatgtcaactttaccaatcttattaagcttgtttggattggtttattcaggttta |
209 |
Q |
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| T |
12290026 |
gaacaaaggaatgaatacaatgaagcccaataaacattacactaacatgtcaactttaccaatcttattaagcttgtttggattggtttattcaggttta |
12289927 |
T |
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| Q |
210 |
actactgacatacataagtttcgtgatactgtttgggagaactat |
254 |
Q |
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| T |
12289926 |
actactgacatacataagtttcgtaatactgtttgggagaactat |
12289882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 12195269 - 12195038
Alignment:
| Q |
22 |
gacactgacatgtcgacctcgataatatttt---aagataatataattcagggtaataacatgcagaaacactcacatggcagttctcaatgaacgaagg |
118 |
Q |
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| T |
12195269 |
gacactgacatgtcggccccgataataatttgagaagataatataattcagggtaataacatgcagatacactcgcatgacagttctcaatgaatgaatg |
12195170 |
T |
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| Q |
119 |
aatgaatacaatgaagcccaacaaacattacactaacatgtcaactttaccaatcttattaagcttgtttggattggtttattcaggtttaactactgac |
218 |
Q |
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| T |
12195169 |
aaacagtacagtgaagcccaacaaacattacactaacatatcaactttaccaatcttattaagcttgtttggattggtttattcaggcgtaactattg-- |
12195072 |
T |
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| Q |
219 |
atacataagtttcgtgatactgtttgggagaactat |
254 |
Q |
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| T |
12195071 |
--acataagtttcgtcatactgtttgggagaactat |
12195038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 12195406 - 12195300
Alignment:
| Q |
74 |
ataacatgcagaaacactcacatggcagttctcaatgaacgaaggaatgaatac-aatgaagcccaacaaacattacactaacatgtcaactttaccaat |
172 |
Q |
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| T |
12195406 |
ataacatacaaaaacacttgcatgccagttctcaatgaacga-ggaaccaatacgaatgaaacccaacacagattacactaacatatcaactttaccaat |
12195308 |
T |
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| Q |
173 |
cttattaa |
180 |
Q |
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| T |
12195307 |
cttattaa |
12195300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 12290198 - 12290148
Alignment:
| Q |
128 |
aatgaagcccaacaaacattacactaacatgtcaactttaccaatcttatt |
178 |
Q |
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| T |
12290198 |
aatgaagcccaacaaagattacactaacatatcaactttaccaatcttatt |
12290148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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