View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_high_25 (Length: 250)
Name: NF3606_high_25
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_high_25 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 305715 - 305889
Alignment:
| Q |
75 |
aaaaacaaacatttgtcaaacaaactaagaggaacgtgtctctctcatacaaatcttcttcaatcatgaacaacaacaaagcagaaaccttcttctgatt |
174 |
Q |
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| T |
305715 |
aaaaacaaacatttgtcaaacaaacta-gagtaacgtgtctctctcatacaaatcttcttcaatcatgaacaacaacaaagcagaaaccttcttctgatt |
305813 |
T |
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| Q |
175 |
cgaaccttaagacacgaaattttgtcccaacacaaattagggttcttaaaaattcccaatttcgattttcatcaat |
250 |
Q |
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| T |
305814 |
cgaaccttaagacacgaaattttgtcccaacacaaattagggttcttaaaaattcccaatttcgattttcatcaat |
305889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 304903 - 304971
Alignment:
| Q |
14 |
aaatgttagatatacttttgaagcccatgggcttatttgacaaaaagcccaatctaacataaaaaacaa |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
304903 |
aaatgttagatatacttttgaagcccatgggcttatttgacaaaaagcccaatctaacatcaaaaacaa |
304971 |
T |
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