View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3606_high_3 (Length: 611)

Name: NF3606_high_3
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3606_high_3
NF3606_high_3
[»] chr6 (11 HSPs)
chr6 (255-593)||(785381-785730)
chr6 (20-190)||(785795-785965)
chr6 (497-584)||(1334687-1334774)
chr6 (257-319)||(407190-407252)
chr6 (497-586)||(26402624-26402713)
chr6 (506-590)||(32225330-32225414)
chr6 (515-590)||(26178527-26178602)
chr6 (497-532)||(6751880-6751915)
chr6 (555-590)||(19369889-19369924)
chr6 (541-592)||(34197186-34197237)
chr6 (497-530)||(19369843-19369876)
[»] chr2 (4 HSPs)
chr2 (497-592)||(43585943-43586038)
chr2 (540-592)||(14450705-14450757)
chr2 (541-585)||(8300180-8300224)
chr2 (542-586)||(13501036-13501080)
[»] chr7 (5 HSPs)
chr7 (497-590)||(25956471-25956563)
chr7 (497-578)||(1885599-1885675)
chr7 (497-590)||(5937361-5937454)
chr7 (541-587)||(48963995-48964041)
chr7 (555-587)||(10702456-10702488)
[»] scaffold0314 (1 HSPs)
scaffold0314 (497-586)||(8974-9061)
[»] chr3 (1 HSPs)
chr3 (497-589)||(34834869-34834960)
[»] chr4 (10 HSPs)
chr4 (541-587)||(39619045-39619091)
chr4 (497-587)||(13307903-13307993)
chr4 (542-592)||(37496786-37496836)
chr4 (541-590)||(5998886-5998935)
chr4 (497-578)||(44362692-44362773)
chr4 (497-528)||(11797630-11797661)
chr4 (541-579)||(21152895-21152933)
chr4 (556-592)||(4790785-4790821)
chr4 (522-590)||(10635053-10635121)
chr4 (442-474)||(24343447-24343479)
[»] scaffold0122 (1 HSPs)
scaffold0122 (536-590)||(10247-10301)
[»] chr1 (3 HSPs)
chr1 (541-587)||(18950996-18951041)
chr1 (498-531)||(7888122-7888155)
chr1 (443-475)||(23439942-23439974)
[»] chr5 (4 HSPs)
chr5 (549-589)||(9031879-9031919)
chr5 (520-587)||(21319877-21319944)
chr5 (497-590)||(7621170-7621268)
chr5 (495-532)||(8420051-8420088)
[»] scaffold0504 (1 HSPs)
scaffold0504 (541-592)||(8640-8691)
[»] chr8 (3 HSPs)
chr8 (497-530)||(10002163-10002196)
chr8 (497-529)||(4298887-4298919)
chr8 (501-529)||(24295138-24295166)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 255 - 593
Target Start/End: Complemental strand, 785730 - 785381
Alignment:
Q  255 tgggatgcactcccacttcaaccatgttttcgaccgtgatttccttcattaaatataggtaacaaagtttctatctcataaccaagcaaaaaatgataat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785730 tgggatgcactcccacttcaaccatgttttcgaccgtgatttccttgattaaatataggtaacaaagtttctatctcataaccaagcaaaaaatgataat 785631  T
Q  355 ttggagtttcaataataacttgctttccttttttcagcttaattagatttcttgtacctatttgttagccttttgaaataacagtggttacctatgaagc 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785630 ttggagtttcaataataacttgctttccttttttcagcttaattagatttcttgtacctatttgttagccttttgaaataacagtggttacctatgaagc 785531  T
Q  455 acggacactgacacggacacggataaaattttcnnnnnnntaacataatttaatgtaatcacaa-----------gtgtcggtgtcggatatgatgtgtg 543  Q
    |||||||| ||||||||||| ||||||||||||       | |||||||| |||||||||||||           |||||||||||| | ||||||||||    
T  785530 acggacacagacacggacactgataaaattttcaaaataatgacataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtcgaacatgatgtgtg 785431  T
Q  544 tcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggtg 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785430 tcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggtg 785381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 785965 - 785795
Alignment:
Q  20 taccaatagtgtctatatattagaaaccaaaatcaaaggcattgagtagaaaaatgtagtaaaggaagagagtggttcaaaggttgtggtacgtagcact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785965 taccaatagtgtctatatattagaaaccaaaatcaaaggcattgagtagaaaaatgtagtaaaggaagagagtggttcaaaggttgtggtacgtagcact 785866  T
Q  120 aaatttcaaaaccagtaacacaaatatccctccatcttcaatcatcatcttagttttgctggatttcaaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785865 aaatttcaaaaccagtaacacaaatatccctccatcttcaatcatcatcttagttttgctggatttcaaat 785795  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 497 - 584
Target Start/End: Original strand, 1334687 - 1334774
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgca 584  Q
    |||||||| ||||||||||||| ||||||||||| | | |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  1334687 acataattcaatgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 407190 - 407252
Alignment:
Q  257 ggatgcactcccacttcaaccatgttttcgaccgtgatttccttcattaaatataggtaacaa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  407190 ggatgcactcccacttcaaccatgttttcgaccgtgatttccttgattaaatataggtaacaa 407252  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 497 - 586
Target Start/End: Complemental strand, 26402713 - 26402624
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 586  Q
    |||||||| | ||||||||||||||||||||||||| | |||   ||| |||||||  |||||  |||||||||||||||||||||||||    
T  26402713 acataattcagtgtaatcacaagtgtcggtgtcggacacgatacatgttggacaccgagacacttcttcaatcagaagtgtccgtgcaac 26402624  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 590
Target Start/End: Complemental strand, 32225414 - 32225330
Alignment:
Q  506 aatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||||||||| |||||||||||||| | ||    ||||||||||| |||||||||||||||||| |||||  ||||| |||||    
T  32225414 aatgtaatcacaggtgtcggtgtcggacacgacccctgtcggacacctggacacaccttcaatcaggagtgtttgtgcagcagag 32225330  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 515 - 590
Target Start/End: Original strand, 26178527 - 26178602
Alignment:
Q  515 acaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||| ||||||||||| | ||   |||||||||| | ||||| ||||||||||||||||||||||||| |||||    
T  26178527 acaagtatcggtgtcggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgtccgtgcatcagag 26178602  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 532
Target Start/End: Complemental strand, 6751915 - 6751880
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcgga 532  Q
    |||||||| |||||||||||||||||||||||||||    
T  6751915 acataattcaatgtaatcacaagtgtcggtgtcgga 6751880  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 555 - 590
Target Start/End: Original strand, 19369889 - 19369924
Alignment:
Q  555 gacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19369889 gacacgccttcaatcagaagtgtccgtgcaacagag 19369924  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 592
Target Start/End: Original strand, 34197186 - 34197237
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    |||||||| ||||||||||||||||||  ||||||||| |||||| ||||||    
T  34197186 gtgtcggagaccaggacacaccttcaactagaagtgtcagtgcaatagaggt 34197237  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 530
Target Start/End: Original strand, 19369843 - 19369876
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcg 530  Q
    |||||||| |||||||||||||||||||||||||    
T  19369843 acataattcaatgtaatcacaagtgtcggtgtcg 19369876  T

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Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 497 - 592
Target Start/End: Complemental strand, 43586038 - 43585943
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    |||||||| ||||||||||||||||||||||||||| | |||  ||||| |||||  |||||||||||||||||||||||| ||||||||||||||    
T  43586038 acataattcaatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacatggacacaccttcaatcagaagtgttcgtgcaacagaggt 43585943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 14450757 - 14450705
Alignment:
Q  540 tgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    |||||| |||||| ||||||  |||||||||||||||||||||||||||||||    
T  14450757 tgtgtcagacaccgggacacgtcttcaatcagaagtgtccgtgcaacagaggt 14450705  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 585
Target Start/End: Complemental strand, 8300224 - 8300180
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaa 585  Q
    |||| ||||||| |||||| ||||||||||||||||||| |||||    
T  8300224 gtgttggacaccgggacacgccttcaatcagaagtgtccatgcaa 8300180  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 586
Target Start/End: Complemental strand, 13501080 - 13501036
Alignment:
Q  542 tgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 586  Q
    ||||||||  || |||||||||||||||||||||||| |||||||    
T  13501080 tgtcggacgtcaagacacaccttcaatcagaagtgtcggtgcaac 13501036  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 497 - 590
Target Start/End: Original strand, 25956471 - 25956563
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||||| ||||||||||||||||||||||||||| | |||   ||||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  25956471 acataattcaatgtaatcacaagtgtcggtgtcggacacgatacatgtcggaca-cgggacacgccttcaatcagaagtgtccgtgcaatagag 25956563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 497 - 578
Target Start/End: Original strand, 1885599 - 1885675
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtc 578  Q
    |||||||| |||||||||||||||||||||||||    || || ||||||||||||||||||||| ||||||||||||||||    
T  1885599 acataattcaatgtaatcacaagtgtcggtgtcg----tgttg-gtgtcggacaccaggacacacgttcaatcagaagtgtc 1885675  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 590
Target Start/End: Complemental strand, 5937454 - 5937361
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||||| |||||||||||||||||| |||||||  | |||   ||||||||||||| | || ||||||||  ||||||||||||||| ||||    
T  5937454 acataattcaatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacaccagaatacgccttcaatatgaagtgtccgtgcaatagag 5937361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 541 - 587
Target Start/End: Complemental strand, 48964041 - 48963995
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    |||||| ||||| ||||| |||||||||||||||||||| |||||||    
T  48964041 gtgtcgaacaccgggacataccttcaatcagaagtgtccatgcaaca 48963995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 587
Target Start/End: Complemental strand, 10702488 - 10702456
Alignment:
Q  555 gacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    |||||||||||||||||||||||| ||||||||    
T  10702488 gacacaccttcaatcagaagtgtcggtgcaaca 10702456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 497 - 586
Target Start/End: Original strand, 8974 - 9061
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 586  Q
    |||||||| || |||||||||||||||||||||  || |  ||||||||||||||| |||||| |||||||||||||||||| |||||||    
T  8974 acataattcaacgtaatcacaagtgtcggtgtc--atgtcgtgtgtgtcggacaccgggacacgccttcaatcagaagtgtctgtgcaac 9061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 497 - 589
Target Start/End: Complemental strand, 34834960 - 34834869
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacaga 589  Q
    |||||||| ||| ||||||| ||| |||||||||||  ||||   ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  34834960 acataattcaat-taatcacgagtatcggtgtcggacttgatacatgtcggacaccgggacacgccttcaatcagaagtgtccgtgcaacaga 34834869  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 541 - 587
Target Start/End: Complemental strand, 39619091 - 39619045
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  39619091 gtgtcggacaccgggacacaccttcaatcagaagtgtccgtgcaaca 39619045  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 497 - 587
Target Start/End: Original strand, 13307903 - 13307993
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    |||||||| ||||||||||||||||| ||||||||| | ||   ||||| ||||||| ||||  |||||||||||||||||  ||||||||    
T  13307903 acataattcaatgtaatcacaagtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaagtgttggtgcaaca 13307993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 542 - 592
Target Start/End: Original strand, 37496786 - 37496836
Alignment:
Q  542 tgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    ||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  37496786 tgtcggacaccgggacacgccttcaatcataagtgtccgtgcaacagaggt 37496836  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 590
Target Start/End: Original strand, 5998886 - 5998935
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  5998886 gtgtcggacacctggacacaccttcaatcataagtgtcggtgcaacagag 5998935  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 578
Target Start/End: Original strand, 44362692 - 44362773
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtc 578  Q
    |||||||||||||||||||||||||| |||||| || | ||   || ||||||| | ||||||||||| |||||||||||||    
T  44362692 acataatttaatgtaatcacaagtgttggtgtcagacacgacacgtatcggacatcgggacacaccttaaatcagaagtgtc 44362773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 528
Target Start/End: Complemental strand, 11797661 - 11797630
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgt 528  Q
    ||||||||||||||||||||||||||||||||    
T  11797661 acataatttaatgtaatcacaagtgtcggtgt 11797630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 541 - 579
Target Start/End: Complemental strand, 21152933 - 21152895
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtcc 579  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  21152933 gtgtcggacatcaggacactccttcaatcagaagtgtcc 21152895  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 592
Target Start/End: Original strand, 4790785 - 4790821
Alignment:
Q  556 acacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  4790785 acacaccttcaatcagaagtgtcggtgctacagaggt 4790821  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 590
Target Start/End: Original strand, 10635053 - 10635121
Alignment:
Q  522 tcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||||| || |||||  |||||||||||| |||||   ||||||||||||| || ||||||||||||    
T  10635053 tcggtgtcagacatgatacgtgtcggacacccggacaactcttcaatcagaagagttcgtgcaacagag 10635121  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 474
Target Start/End: Original strand, 24343447 - 24343479
Alignment:
Q  442 ttacctatgaagcacggacactgacacggacac 474  Q
    ||||||||||||||||||||| |||||||||||    
T  24343447 ttacctatgaagcacggacacagacacggacac 24343479  T

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Target: scaffold0122 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 536 - 590
Target Start/End: Complemental strand, 10301 - 10247
Alignment:
Q  536 gatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  10301 gatgcgtgtcggacagcaggacacaccttcaatcagaagtgtctgtgcaagagag 10247  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 541 - 587
Target Start/End: Original strand, 18950996 - 18951041
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  18950996 gtgtcggacaccaggacacaccttcaatcagaagtgt-cgtgcaaca 18951041  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 531
Target Start/End: Original strand, 7888122 - 7888155
Alignment:
Q  498 cataatttaatgtaatcacaagtgtcggtgtcgg 531  Q
    ||||||||||||||||||||||||||||||||||    
T  7888122 cataatttaatgtaatcacaagtgtcggtgtcgg 7888155  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 475
Target Start/End: Original strand, 23439942 - 23439974
Alignment:
Q  443 tacctatgaagcacggacactgacacggacacg 475  Q
    |||||||||||||||||||| ||||||||||||    
T  23439942 tacctatgaagcacggacacagacacggacacg 23439974  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 549 - 589
Target Start/End: Complemental strand, 9031919 - 9031879
Alignment:
Q  549 caccaggacacaccttcaatcagaagtgtccgtgcaacaga 589  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  9031919 caccaggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 587
Target Start/End: Complemental strand, 21319944 - 21319877
Alignment:
Q  520 tgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 587  Q
    ||||||||||||| | ||||| | ||| ||||||||| | |||||||||||||||||| |||||||||    
T  21319944 tgtcggtgtcggacacgatgtatatcgaacaccaggatagaccttcaatcagaagtgttcgtgcaaca 21319877  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 590
Target Start/End: Complemental strand, 7621268 - 7621170
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtg-----tcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 590  Q
    |||||||||||||||||||||||| ||||||     || || | |||   | ||||||| ||||||||  |||||||||||||||||||||||||||||    
T  7621268 acataatttaatgtaatcacaagtatcggtgtcatatcagacacgatacttatcggacatcaggacacgtcttcaatcagaagtgtccgtgcaacagag 7621170  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 532
Target Start/End: Original strand, 8420051 - 8420088
Alignment:
Q  495 taacataatttaatgtaatcacaagtgtcggtgtcgga 532  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  8420051 taacataattcaatgtaattacaagtgtcggtgtcgga 8420088  T

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Target: scaffold0504 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 592
Target Start/End: Complemental strand, 8691 - 8640
Alignment:
Q  541 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 592  Q
    ||||| |||||| |||||  ||||||||||||||||||||||||||||||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtccgtgcaacagaggt 8640  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 530
Target Start/End: Complemental strand, 10002196 - 10002163
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtcg 530  Q
    ||||||||||||||||||||| ||||||||||||    
T  10002196 acataatttaatgtaatcacatgtgtcggtgtcg 10002163  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 529
Target Start/End: Complemental strand, 4298919 - 4298887
Alignment:
Q  497 acataatttaatgtaatcacaagtgtcggtgtc 529  Q
    ||||||||||||||||| |||||||||||||||    
T  4298919 acataatttaatgtaattacaagtgtcggtgtc 4298887  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 529
Target Start/End: Complemental strand, 24295166 - 24295138
Alignment:
Q  501 aatttaatgtaatcacaagtgtcggtgtc 529  Q
    |||||||||||||||||||||||||||||    
T  24295166 aatttaatgtaatcacaagtgtcggtgtc 24295138  T

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