View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_high_31 (Length: 240)
Name: NF3606_high_31
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 10902627 - 10902479
Alignment:
| Q |
21 |
agaaggaatgattagactataattgatttgatgatgattgaaaaggtgttgagaattttgatatcaaagtttcatcatattgtagtagccttggagatat |
120 |
Q |
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| T |
10902627 |
agaaggaatggtgagactataattgacttgatgaagattgaaaaggtgttgaaaatattgacatcaaggtttcatcatattgtagtagccttggaggaat |
10902528 |
T |
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| Q |
121 |
ccaagaatcttgatgaaatg--agttgaagatctgcaagcaagccttga |
167 |
Q |
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| T |
10902527 |
ccaaaaatcttgatgaaatgaaagttgaagatctgcaagcaagccttga |
10902479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 10912591 - 10912416
Alignment:
| Q |
20 |
gagaaggaatgattagactataattgatttgatgatgattgaaaaggtgttgagaattttgatatcaaagtttcatcatattgtagtagccttggagata |
119 |
Q |
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| T |
10912591 |
gagaaggaatggtgagaccgtaactgacttgatgaagattgaaaaggtgttaagaacactgacatcaaggtttgatcatattttagtagccttggaggaa |
10912492 |
T |
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| Q |
120 |
tccaagaatcttgatgaaatg--agttgaagatctgcaagcaagccttgaagctcattaattgagattaacaaaag |
193 |
Q |
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| T |
10912491 |
ttcaagaatcttgatgaaatgaaagttgaagatctgcaagcgagtcttgaagctcgtgaattgagattaacaaaag |
10912416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 10902480 - 10902442
Alignment:
| Q |
182 |
gattaacaaaagtgaagataaggcaaattcaaggaagaa |
220 |
Q |
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| T |
10902480 |
gattaacaaaagtaaagataaggtaaattcaaggaagaa |
10902442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 20693497 - 20693587
Alignment:
| Q |
51 |
atgatgattgaaaaggtgttgagaattttgatatcaaagtttcatcatattgtagtagccttggagatatccaagaatcttgatgaaatga |
141 |
Q |
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| T |
20693497 |
atgaagattgaaaaggtgttgagaactttgacatcaaagtatgaacatattgcagtagccttggaggaatcaaagaatcttgatgaaatga |
20693587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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