View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_high_33 (Length: 236)
Name: NF3606_high_33
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23828576 - 23828798
Alignment:
| Q |
1 |
tcacatcctcatctagtgaaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23828576 |
tcacatcctcatctagtgaaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcact |
23828675 |
T |
|
| Q |
101 |
tgttcatcagtgagtgcttcccagttcatcttttctcagttgtacttgtactggagaaggcatgcctaataacattaccattaatgatgtaacaggaggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23828676 |
tgttcatcagtgagtgcttcccagttcatcttttctcacttgtacttgtactggagaaggcatgcctaataacattaccattaatgatgtaacaggaggc |
23828775 |
T |
|
| Q |
201 |
tcatattttcaacctctttcttg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
23828776 |
tcatattttcaacctctttcttg |
23828798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 23824649 - 23824868
Alignment:
| Q |
2 |
cacatcctcatctagtgaaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcactt |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||| |
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| T |
23824649 |
cacatcctcatctagtgaaattgattggttattgtcttgaagatgaaaatagccttttggtctatgaatttatgccacgtggcagcttggagaatcactt |
23824748 |
T |
|
| Q |
102 |
gttcatcagtgagtgcttcccagttcatcttttctcagttgtacttgtactggagaaggcatgcctaataacattacc---attaatgatgtaa--cagg |
196 |
Q |
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|||||| ||| ||| ||||| |||||||| |||| || ||| |||| || ||||||||||||| |||||||||| | ||||| ||||| |||| |
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| T |
23824749 |
gttcatgagtaagttcttccaagttcatcatttcaca-ttg---ttgttcttgagaaggcatgcc---taacattaccaataataatgttgtaacgcagg |
23824841 |
T |
|
| Q |
197 |
aggctcatattttcaacctctttcttg |
223 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
23824842 |
aggctcatattttcaacctctttcttg |
23824868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 23819327 - 23819548
Alignment:
| Q |
4 |
catcctcatctagtgaaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcacttgt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||||| ||||| | |||||||||||||| ||||||| ||||||||||||||||| |
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| T |
23819327 |
catcctcatctagtgaaattgattggttattgcctagaagaggaaaacaaaattctggtctatgaatttatgcctcgtggcaccttggagaatcacttgt |
23819426 |
T |
|
| Q |
104 |
tcatcagtgagtgcttcccagttcatcttttctcagt--tgtacttgtactggag-aaggcatgcctaataacattaccattaatgatgtaacaggaggc |
200 |
Q |
| |
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|||||||||||| |||| |||||||| || |||| | ||||||| ||| |||||||||||||||| ||||||| |||| |||||||||||||| |
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| T |
23819427 |
tcatcagtgagt-attcctggttcatctactcacagtcacattgttgtacttgagaaaggcatgcctaataatattaccaataataatgtaacaggaggc |
23819525 |
T |
|
| Q |
201 |
tcatattttcaacctctttcttg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
23819526 |
tcatattttcaacctctttcttg |
23819548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 23832422 - 23832533
Alignment:
| Q |
4 |
catcctcatctagtgaaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcacttgt |
103 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||||||||||| ||||| ||||| | | |||||| ||||| ||||||| ||||||||||||||||| |
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| T |
23832422 |
catcctcatctaatcaaattgattggttattgccttgaagatgacaacagtcttcttgtctttgaattcatgcctcgtggcaacttggagaatcacttgt |
23832521 |
T |
|
| Q |
104 |
tcatcagtgagt |
115 |
Q |
| |
|
|||||||||||| |
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|
| T |
23832522 |
tcatcagtgagt |
23832533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 23832587 - 23832645
Alignment:
| Q |
165 |
cctaataacattaccattaatgatgtaacaggaggctcatattttcaacctctttcttg |
223 |
Q |
| |
|
|||||||| |||| || | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
23832587 |
cctaataatattatcaattatgatttaacaggaggctcatattttcaacctctttcttg |
23832645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 41442103 - 41442205
Alignment:
| Q |
4 |
catcctcatctagtgaaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcacttgt |
103 |
Q |
| |
|
||||||||| |||||| |||||| |||||||| |||||||||||| || | ||||| | ||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
41442103 |
catcctcatttagtgagattgatcggttattgccttgaagatgaacaccgtcttctcgtctatgagtttatgcctcgtggaagcttggagaatcacttgt |
41442202 |
T |
|
| Q |
104 |
tca |
106 |
Q |
| |
|
||| |
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|
| T |
41442203 |
tca |
41442205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 41458875 - 41458986
Alignment:
| Q |
4 |
catcctcatctagtgaaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcacttgt |
103 |
Q |
| |
|
||||||||| |||||| |||||| |||||||| |||||| ||||| || | ||||| | ||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
41458875 |
catcctcatttagtgagattgatcggttattgccttgaaaatgaacaccgtcttctcgtctatgagtttatgcctcgtggaagcttggagaatcacttgt |
41458974 |
T |
|
| Q |
104 |
tcatcagtgagt |
115 |
Q |
| |
|
||| ||||||| |
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|
| T |
41458975 |
tcaggagtgagt |
41458986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 41448536 - 41448636
Alignment:
| Q |
4 |
catcctcatctagtgaaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcacttgt |
103 |
Q |
| |
|
||||||||| |||||| |||||| |||||||| |||||| ||||| || | ||||| | ||||| |||||| | ||| ||||||||||||||||||| |
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| T |
41448536 |
catcctcatttagtgagattgatcggttattgccttgaaaatgaacaccgtcttctagtctatgagtttatggccaatggaagcttggagaatcacttgt |
41448635 |
T |
|
| Q |
104 |
t |
104 |
Q |
| |
|
| |
|
|
| T |
41448636 |
t |
41448636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 3675453 - 3675359
Alignment:
| Q |
4 |
catcctcatctagtgaaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatca |
98 |
Q |
| |
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||||| ||||| ||||| || ||||| |||||| ||||||||||| |||| ||| || | ||||||| |||||| | || |||||||||||||| |
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| T |
3675453 |
catccacatcttgtgaagttaattggatattgttttgaagatgaacacaggcttttggtgtatgaatacatgccaagaggtagcttggagaatca |
3675359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 10845303 - 10845218
Alignment:
| Q |
19 |
aaattgattggttattgtcttgaagatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcacttgtt |
104 |
Q |
| |
|
||||||||||| |||||| |||||||||| | || || || | |||||||| |||||| | || |||||||||||||||||||| |
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|
| T |
10845303 |
aaattgattggatattgttgtgaagatgaagaaagactacttgtctatgaattcatgccaagaggaagcttggagaatcacttgtt |
10845218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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