View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3606_high_6 (Length: 570)
Name: NF3606_high_6
Description: NF3606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3606_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 12 - 553
Target Start/End: Original strand, 49943628 - 49944169
Alignment:
| Q |
12 |
atgaacagaatccaacataacgggaagagtacttctgacgtcttcaggctgcagagcatctaccccatctacatgttctgcaacaatatcgttatcatca |
111 |
Q |
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| T |
49943628 |
atgaacagaatccaacataacgggaagagtacttgtgaggtcttcaggctgcagagcatctaccccatctacatgttctgcaacaatatcgttatcatca |
49943727 |
T |
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| Q |
112 |
tcgccatcggcaacatattctgtaattttgtcaacatcatcgtttaccaaatttgtatcaagatttgtagaacaaaagcattcagaagacgatgaaggct |
211 |
Q |
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| T |
49943728 |
tcgccatcggcaacatattctgtaattttgtcaacatcatcgtttaccaaatttgtatcaagatttgtagaacaaaagcattcagaagatgatgaaggct |
49943827 |
T |
|
| Q |
212 |
ctccagactttccctgtgattgaccgcgaaagtatgcacgtgctgccgatgcgctgcatttgagaattcttcttttgatggcaacaccagatgcagctat |
311 |
Q |
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| T |
49943828 |
ctccagactttccctgtgattgaccgcgaaagtatgcacgtgctgccgatgcactgcatttgagaattcttcttttgatggcaacaccagatgcagctat |
49943927 |
T |
|
| Q |
312 |
atctctcctcttcgacttcctcttaaatttgtgtttccaatgcctttttataactctagaccaaaactgaagtcctggacctggaaatttcactctaaat |
411 |
Q |
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| T |
49943928 |
atctctcctcttcgacttcctcttaaatttgtgtttccaatgcctttttataactctagaccaaaactgaagtcctggacctggaaatttcactctaaat |
49944027 |
T |
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| Q |
412 |
ggcttttccaaatcagcatgtttcatatcataatcaacacccgagtctacacgctgatgatcatgtttcccttcactcatgccgaaaaaggagcttgaat |
511 |
Q |
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| T |
49944028 |
ggcttttccaaatcagcatgtttcatatcataatcaacacccgagtctacacactgatgatcatgtttcccttcactcatgccgaaaaaggagcttgaat |
49944127 |
T |
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| Q |
512 |
tggttgctcctcttgaatgacctacattctcctttaaatcat |
553 |
Q |
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| T |
49944128 |
cggttgctcctcttgaatgacctacattctcctttaaatcat |
49944169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 190 - 452
Target Start/End: Complemental strand, 1904127 - 1903865
Alignment:
| Q |
190 |
cattcagaagacgatgaaggctctccagactttccctgtgattgaccgcgaaagtatgcacgtgctgccgatgcgctgcatttgagaattcttcttttga |
289 |
Q |
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||||||||||| |||| |||||| ||| ||| || ||||||||| | |||||||||||||| |||||||||||||| | || | |||||| |||| |
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| T |
1904127 |
cattcagaagatgatgcaggctccccatccttcccttgtgattgatcacgaaagtatgcacgagctgccgatgcgctacgttcaaacattcttttttttg |
1904028 |
T |
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| Q |
290 |
tggcaacaccagatgcagctatatctctcctcttcgacttcctcttaaatttgtgtttccaatgcctttttataactctagaccaaaactgaagtcctgg |
389 |
Q |
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| T |
1904027 |
tagcaacaccagatgcatagatcttactcccattagccttccttttaaatctgtttttcctatgccccgataatactctagaccaaaatcgaaaccctga |
1903928 |
T |
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| Q |
390 |
acctggaaatttcactctaaatggcttttccaaatcagcatgtttcatatcataatcaacacc |
452 |
Q |
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|| |||||||||||| ||||| ||||||||||| || || ||| |||| ||||||||||| |
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| T |
1903927 |
cccaagaaatttcactccaaatgctttttccaaatctgcgtgcttcgtatcgtaatcaacacc |
1903865 |
T |
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